Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
LIMK1P53667 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
LIMK1P53667 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
LIMK1P53667 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMK1P53667 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 AL355312.1-201ENST00000407115 2176 ntBASIC16.21■□□□□ 0.19
LIMK1P53667 SLC22A20-204ENST00000530038 1673 ntBASIC16.21■□□□□ 0.19
LIMK1P53667 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LIMK1P53667 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
LIMK1P53667 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 AL080243.2-201ENST00000418783 582 ntBASIC16.21■□□□□ 0.19
LIMK1P53667 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.21■□□□□ 0.19
LIMK1P53667 AC007389.4-201ENST00000454674 793 ntBASIC16.21■□□□□ 0.19
LIMK1P53667 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
LIMK1P53667 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.21■□□□□ 0.19
LIMK1P53667 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.21■□□□□ 0.19
LIMK1P53667 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 MIR6775-201ENST00000617557 69 ntBASIC16.21■□□□□ 0.19
LIMK1P53667 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC16.21■□□□□ 0.19
LIMK1P53667 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 TOP3BP1-201ENST00000420768 1380 ntBASIC16.21■□□□□ 0.19
LIMK1P53667 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
LIMK1P53667 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMK1P53667 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMK1P53667 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
LIMK1P53667 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.21■□□□□ 0.18
LIMK1P53667 PCDH8P1-201ENST00000428983 2773 ntBASIC16.21■□□□□ 0.18
LIMK1P53667 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMK1P53667 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.2■□□□□ 0.18
LIMK1P53667 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LIMK1P53667 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMK1P53667 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.2■□□□□ 0.18
LIMK1P53667 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMK1P53667 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
LIMK1P53667 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
LIMK1P53667 BCYRN1-201ENST00000418539 200 ntBASIC16.2■□□□□ 0.18
LIMK1P53667 HLA-DPB2-205ENST00000435074 1188 ntBASIC16.2■□□□□ 0.18
LIMK1P53667 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 RN7SL618P-201ENST00000477850 296 ntBASIC16.2■□□□□ 0.18
LIMK1P53667 AL079307.3-201ENST00000556114 283 ntBASIC16.2■□□□□ 0.18
LIMK1P53667 MIR4538-201ENST00000581377 78 ntBASIC16.2■□□□□ 0.18
LIMK1P53667 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LIMK1P53667 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
LIMK1P53667 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
LIMK1P53667 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMK1P53667 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.2■□□□□ 0.18
LIMK1P53667 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.2■□□□□ 0.18
LIMK1P53667 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.2■□□□□ 0.18
LIMK1P53667 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LIMK1P53667 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMK1P53667 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMK1P53667 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
LIMK1P53667 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK1P53667 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK1P53667 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
LIMK1P53667 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK1P53667 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK1P53667 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms