Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX3P48380 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX3P48380 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.55■□□□□ 0.08
RFX3P48380 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.55■□□□□ 0.08
RFX3P48380 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX3P48380 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.55■□□□□ 0.08
RFX3P48380 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
RFX3P48380 AC008894.3-201ENST00000624324 3103 ntBASIC15.55■□□□□ 0.08
RFX3P48380 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
RFX3P48380 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RFX3P48380 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX3P48380 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX3P48380 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.54■□□□□ 0.08
RFX3P48380 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
RFX3P48380 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.54■□□□□ 0.08
RFX3P48380 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 AC092364.2-201ENST00000596710 2692 ntBASIC15.54■□□□□ 0.08
RFX3P48380 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
RFX3P48380 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.54■□□□□ 0.08
RFX3P48380 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
RFX3P48380 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.54■□□□□ 0.08
RFX3P48380 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.54■□□□□ 0.08
RFX3P48380 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.54■□□□□ 0.08
RFX3P48380 VN2R19P-201ENST00000442399 1052 ntBASIC15.54■□□□□ 0.08
RFX3P48380 AL513480.1-201ENST00000451731 511 ntBASIC15.54■□□□□ 0.08
RFX3P48380 CXCL1P1-201ENST00000502804 216 ntBASIC15.54■□□□□ 0.08
RFX3P48380 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
RFX3P48380 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.54■□□□□ 0.08
RFX3P48380 SLC25A1P1-201ENST00000528351 927 ntBASIC15.54■□□□□ 0.08
RFX3P48380 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.54■□□□□ 0.08
RFX3P48380 AC005412.3-201ENST00000580309 715 ntBASIC15.54■□□□□ 0.08
RFX3P48380 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.54■□□□□ 0.08
RFX3P48380 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.54■□□□□ 0.08
RFX3P48380 AP001350.2-201ENST00000625104 1094 ntBASIC15.54■□□□□ 0.08
RFX3P48380 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.54■□□□□ 0.08
RFX3P48380 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
RFX3P48380 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
RFX3P48380 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.54■□□□□ 0.08
RFX3P48380 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX3P48380 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.53■□□□□ 0.08
RFX3P48380 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.53■□□□□ 0.08
RFX3P48380 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
RFX3P48380 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 AC005052.1-201ENST00000625181 2492 ntBASIC15.53■□□□□ 0.08
RFX3P48380 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
RFX3P48380 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.53■□□□□ 0.08
RFX3P48380 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.53■□□□□ 0.08
RFX3P48380 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.53■□□□□ 0.08
RFX3P48380 PRSS29P-201ENST00000440800 595 ntBASIC15.53■□□□□ 0.08
RFX3P48380 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
RFX3P48380 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.53■□□□□ 0.08
RFX3P48380 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.53■□□□□ 0.08
RFX3P48380 AC087641.1-201ENST00000557561 1021 ntBASIC15.53■□□□□ 0.08
RFX3P48380 AC091167.2-201ENST00000579581 588 ntBASIC15.53■□□□□ 0.08
RFX3P48380 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.53■□□□□ 0.08
RFX3P48380 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.53■□□□□ 0.08
RFX3P48380 AC008741.2-201ENST00000612792 3115 ntBASIC15.53■□□□□ 0.08
RFX3P48380 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RFX3P48380 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.53■□□□□ 0.08
RFX3P48380 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.53■□□□□ 0.08
RFX3P48380 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms