Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL353732.1-201ENST00000569618 1459 ntBASIC15.55■□□□□ 0.08
SOX3P41225 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SOX3P41225 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.55■□□□□ 0.08
SOX3P41225 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.55■□□□□ 0.08
SOX3P41225 HTR5BP-201ENST00000430851 1154 ntBASIC15.55■□□□□ 0.08
SOX3P41225 FAM58CP-201ENST00000435741 640 ntBASIC15.55■□□□□ 0.08
SOX3P41225 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
SOX3P41225 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.55■□□□□ 0.08
SOX3P41225 AL031432.2-201ENST00000566714 459 ntBASIC15.55■□□□□ 0.08
SOX3P41225 AL928711.1-201ENST00000570165 459 ntBASIC15.55■□□□□ 0.08
SOX3P41225 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 MIR4515-201ENST00000584082 81 ntBASIC15.55■□□□□ 0.08
SOX3P41225 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.55■□□□□ 0.08
SOX3P41225 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SOX3P41225 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.55■□□□□ 0.08
SOX3P41225 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SOX3P41225 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.55■□□□□ 0.08
SOX3P41225 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
SOX3P41225 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX3P41225 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX3P41225 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.54■□□□□ 0.08
SOX3P41225 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.54■□□□□ 0.08
SOX3P41225 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 AC022188.1-201ENST00000620960 1664 ntBASIC15.54■□□□□ 0.08
SOX3P41225 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
SOX3P41225 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 KRT8P49-201ENST00000604166 1432 ntBASIC15.54■□□□□ 0.08
SOX3P41225 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
SOX3P41225 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.54■□□□□ 0.08
SOX3P41225 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
SOX3P41225 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.54■□□□□ 0.08
SOX3P41225 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.54■□□□□ 0.08
SOX3P41225 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.54■□□□□ 0.08
SOX3P41225 MIR4469-201ENST00000583919 79 ntBASIC15.54■□□□□ 0.08
SOX3P41225 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.54■□□□□ 0.08
SOX3P41225 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.54■□□□□ 0.08
SOX3P41225 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.54■□□□□ 0.08
SOX3P41225 AC091812.2-201ENST00000619081 385 ntBASIC15.54■□□□□ 0.08
SOX3P41225 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
SOX3P41225 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 AL513477.1-201ENST00000602865 2407 ntBASIC15.54■□□□□ 0.08
SOX3P41225 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX3P41225 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.54■□□□□ 0.08
SOX3P41225 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 AC012569.1-201ENST00000591191 1524 ntBASIC15.53■□□□□ 0.08
SOX3P41225 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
SOX3P41225 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
SOX3P41225 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.53■□□□□ 0.08
SOX3P41225 AC211486.1-202ENST00000416371 468 ntBASIC15.53■□□□□ 0.08
SOX3P41225 RPS8P6-201ENST00000426177 609 ntBASIC15.53■□□□□ 0.08
SOX3P41225 MKNK2P1-201ENST00000437526 628 ntBASIC15.53■□□□□ 0.08
SOX3P41225 AC004967.1-201ENST00000453589 447 ntBASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms