Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
MSH3P20585 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
MSH3P20585 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
MSH3P20585 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
MSH3P20585 RPSAP43-201ENST00000402237 625 ntBASIC16.41■□□□□ 0.22
MSH3P20585 AL671277.1-201ENST00000429656 993 ntBASIC16.41■□□□□ 0.22
MSH3P20585 CEND1P1-201ENST00000451006 455 ntBASIC16.41■□□□□ 0.22
MSH3P20585 KRT18P34-201ENST00000488218 1270 ntBASIC16.41■□□□□ 0.22
MSH3P20585 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.41■□□□□ 0.22
MSH3P20585 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.41■□□□□ 0.22
MSH3P20585 RARRES2P8-201ENST00000566335 367 ntBASIC16.41■□□□□ 0.22
MSH3P20585 AC099522.2-201ENST00000607001 744 ntBASIC16.41■□□□□ 0.22
MSH3P20585 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.41■□□□□ 0.22
MSH3P20585 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
MSH3P20585 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.41■□□□□ 0.22
MSH3P20585 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
MSH3P20585 WASH6P-202ENST00000359512 1437 ntBASIC16.41■□□□□ 0.22
MSH3P20585 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.41■□□□□ 0.22
MSH3P20585 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.41■□□□□ 0.22
MSH3P20585 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
MSH3P20585 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.41■□□□□ 0.22
MSH3P20585 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.41■□□□□ 0.22
MSH3P20585 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.41■□□□□ 0.22
MSH3P20585 CYP2T1P-202ENST00000641596 2535 ntBASIC16.41■□□□□ 0.22
MSH3P20585 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MSH3P20585 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 AC016027.1-202ENST00000607927 1699 ntBASIC16.4■□□□□ 0.22
MSH3P20585 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
MSH3P20585 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 GGT4P-201ENST00000623672 1708 ntBASIC16.4■□□□□ 0.22
MSH3P20585 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.4■□□□□ 0.22
MSH3P20585 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.4■□□□□ 0.22
MSH3P20585 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.4■□□□□ 0.22
MSH3P20585 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.4■□□□□ 0.22
MSH3P20585 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MSH3P20585 FAM86C2P-203ENST00000528684 1004 ntBASIC16.4■□□□□ 0.22
MSH3P20585 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.4■□□□□ 0.22
MSH3P20585 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.4■□□□□ 0.22
MSH3P20585 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
MSH3P20585 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MSH3P20585 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.4■□□□□ 0.22
MSH3P20585 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
MSH3P20585 AC023511.2-201ENST00000618803 211 ntBASIC16.4■□□□□ 0.22
MSH3P20585 AC006449.5-201ENST00000610658 2098 ntBASIC16.4■□□□□ 0.22
MSH3P20585 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.4■□□□□ 0.22
MSH3P20585 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
MSH3P20585 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MSH3P20585 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 GGT3P-204ENST00000453783 1664 ntBASIC16.4■□□□□ 0.22
MSH3P20585 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.4■□□□□ 0.22
MSH3P20585 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MSH3P20585 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
MSH3P20585 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.4■□□□□ 0.22
MSH3P20585 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSH3P20585 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.39■□□□□ 0.21
MSH3P20585 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
MSH3P20585 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 ELL2P1-201ENST00000413990 1906 ntBASIC16.39■□□□□ 0.21
MSH3P20585 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.39■□□□□ 0.21
MSH3P20585 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms