Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC19.31■□□□□ 0.68
HLA-DOAP06340 PIN1P1-201ENST00000412108 996 ntBASIC19.31■□□□□ 0.68
HLA-DOAP06340 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC19.31■□□□□ 0.68
HLA-DOAP06340 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC19.31■□□□□ 0.68
HLA-DOAP06340 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC19.31■□□□□ 0.68
HLA-DOAP06340 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC19.31■□□□□ 0.68
HLA-DOAP06340 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.31■□□□□ 0.68
HLA-DOAP06340 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
HLA-DOAP06340 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
HLA-DOAP06340 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 AC005622.1-201ENST00000636801 1703 ntBASIC19.31■□□□□ 0.68
HLA-DOAP06340 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DOAP06340 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DOAP06340 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DOAP06340 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DOAP06340 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DOAP06340 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DOAP06340 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DOAP06340 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DOAP06340 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DOAP06340 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DOAP06340 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 CRB3P1-201ENST00000449338 276 ntBASIC19.3■□□□□ 0.68
HLA-DOAP06340 SERBP1P3-201ENST00000459980 809 ntBASIC19.3■□□□□ 0.68
HLA-DOAP06340 RN7SL618P-201ENST00000477850 296 ntBASIC19.3■□□□□ 0.68
HLA-DOAP06340 AC009407.1-201ENST00000568958 598 ntBASIC19.3■□□□□ 0.68
HLA-DOAP06340 PRR29-204ENST00000577953 565 ntTSL 4 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 SSH2-210ENST00000582084 560 ntTSL 3 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DOAP06340 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 U82695.1-201ENST00000635752 1889 ntBASIC19.3■□□□□ 0.68
HLA-DOAP06340 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DOAP06340 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
HLA-DOAP06340 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.29■□□□□ 0.68
HLA-DOAP06340 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 COQ6-210ENST00000554920 649 ntTSL 3 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 AC027307.3-201ENST00000594262 1100 ntBASIC19.29■□□□□ 0.68
HLA-DOAP06340 AC008738.7-201ENST00000609744 511 ntBASIC19.29■□□□□ 0.68
HLA-DOAP06340 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.29■□□□□ 0.68
HLA-DOAP06340 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DOAP06340 HLA-A-202ENST00000376806 1854 ntBASIC19.28■□□□□ 0.68
HLA-DOAP06340 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HLA-DOAP06340 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HLA-DOAP06340 AC078925.2-201ENST00000624013 1973 ntBASIC19.28■□□□□ 0.68
HLA-DOAP06340 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms