Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL3A1P02461 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC21.46■■□□□ 1.03
COL3A1P02461 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.03
COL3A1P02461 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC21.45■■□□□ 1.03
COL3A1P02461 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
COL3A1P02461 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.03
COL3A1P02461 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
COL3A1P02461 MIR648-201ENST00000385046 94 ntBASIC21.45■■□□□ 1.03
COL3A1P02461 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.03
COL3A1P02461 HAUS4P1-201ENST00000406739 1145 ntBASIC21.45■■□□□ 1.03
COL3A1P02461 RAB35-202ENST00000534951 939 ntTSL 2 BASIC21.45■■□□□ 1.03
COL3A1P02461 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.45■■□□□ 1.03
COL3A1P02461 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.03
COL3A1P02461 RNA5-8SN1-201ENST00000610460 153 ntBASIC21.45■■□□□ 1.03
COL3A1P02461 RNA5-8SN5-202ENST00000612463 153 ntBASIC21.45■■□□□ 1.03
COL3A1P02461 RNA5-8SN4-201ENST00000613359 153 ntBASIC21.45■■□□□ 1.03
COL3A1P02461 RNA5-8SN5-201ENST00000619471 153 ntBASIC21.45■■□□□ 1.03
COL3A1P02461 AC006449.5-201ENST00000610658 2098 ntBASIC21.45■■□□□ 1.02
COL3A1P02461 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC21.45■■□□□ 1.02
COL3A1P02461 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC21.45■■□□□ 1.02
COL3A1P02461 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC21.45■■□□□ 1.02
COL3A1P02461 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 KRT8P37-201ENST00000451609 1420 ntBASIC21.45■■□□□ 1.02
COL3A1P02461 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
COL3A1P02461 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
COL3A1P02461 AC004987.2-201ENST00000395959 1148 ntBASIC21.45■■□□□ 1.02
COL3A1P02461 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC21.45■■□□□ 1.02
COL3A1P02461 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC21.45■■□□□ 1.02
COL3A1P02461 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC21.45■■□□□ 1.02
COL3A1P02461 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC21.45■■□□□ 1.02
COL3A1P02461 REEP4-207ENST00000523293 913 ntTSL 3 BASIC21.45■■□□□ 1.02
COL3A1P02461 AC243562.2-201ENST00000561247 970 ntBASIC21.45■■□□□ 1.02
COL3A1P02461 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC21.45■■□□□ 1.02
COL3A1P02461 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL3A1P02461 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC21.44■■□□□ 1.02
COL3A1P02461 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
COL3A1P02461 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
COL3A1P02461 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC21.44■■□□□ 1.02
COL3A1P02461 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC21.44■■□□□ 1.02
COL3A1P02461 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC21.44■■□□□ 1.02
COL3A1P02461 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
COL3A1P02461 AL589987.1-201ENST00000453380 819 ntBASIC21.44■■□□□ 1.02
COL3A1P02461 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.44■■□□□ 1.02
COL3A1P02461 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC21.44■■□□□ 1.02
COL3A1P02461 SUOX-214ENST00000551841 906 ntTSL 3 BASIC21.44■■□□□ 1.02
COL3A1P02461 AC092364.2-202ENST00000597012 1073 ntBASIC21.44■■□□□ 1.02
COL3A1P02461 SPIB-207ENST00000597855 564 ntTSL 4 BASIC21.44■■□□□ 1.02
COL3A1P02461 AL109936.8-201ENST00000641772 604 ntBASIC21.44■■□□□ 1.02
COL3A1P02461 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL3A1P02461 ZBTB45P2-201ENST00000452245 1531 ntBASIC21.44■■□□□ 1.02
COL3A1P02461 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
COL3A1P02461 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC21.43■■□□□ 1.02
COL3A1P02461 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC21.43■■□□□ 1.02
COL3A1P02461 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
COL3A1P02461 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC21.43■■□□□ 1.02
COL3A1P02461 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
COL3A1P02461 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 BTBD7P1-201ENST00000447253 1453 ntBASIC21.43■■□□□ 1.02
COL3A1P02461 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC21.43■■□□□ 1.02
COL3A1P02461 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
COL3A1P02461 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC21.43■■□□□ 1.02
COL3A1P02461 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC21.43■■□□□ 1.02
COL3A1P02461 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC21.43■■□□□ 1.02
COL3A1P02461 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC21.43■■□□□ 1.02
COL3A1P02461 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
COL3A1P02461 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL3A1P02461 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms