Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC20.7■□□□□ 0.9
NPHP1O15259 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.7■□□□□ 0.9
NPHP1O15259 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 AP006294.1-201ENST00000415407 339 ntBASIC20.7■□□□□ 0.9
NPHP1O15259 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC20.7■□□□□ 0.9
NPHP1O15259 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
NPHP1O15259 RN7SL752P-201ENST00000463779 287 ntBASIC20.7■□□□□ 0.9
NPHP1O15259 RN7SL618P-201ENST00000477850 296 ntBASIC20.7■□□□□ 0.9
NPHP1O15259 API5-211ENST00000534695 560 ntTSL 5 BASIC20.7■□□□□ 0.9
NPHP1O15259 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.7■□□□□ 0.9
NPHP1O15259 RPS15-212ENST00000593052 629 ntTSL 2 BASIC20.7■□□□□ 0.9
NPHP1O15259 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC20.7■□□□□ 0.9
NPHP1O15259 SIGLEC29P-201ENST00000599873 1114 ntBASIC20.7■□□□□ 0.9
NPHP1O15259 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 AC004840.1-201ENST00000636359 365 ntBASIC20.7■□□□□ 0.9
NPHP1O15259 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.7■□□□□ 0.9
NPHP1O15259 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
NPHP1O15259 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
NPHP1O15259 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP1O15259 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
NPHP1O15259 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.69■□□□□ 0.9
NPHP1O15259 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
NPHP1O15259 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.69■□□□□ 0.9
NPHP1O15259 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
NPHP1O15259 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC20.69■□□□□ 0.9
NPHP1O15259 AC087499.6-201ENST00000411576 835 ntBASIC20.69■□□□□ 0.9
NPHP1O15259 GIMAP3P-201ENST00000495150 836 ntBASIC20.69■□□□□ 0.9
NPHP1O15259 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
NPHP1O15259 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC20.69■□□□□ 0.9
NPHP1O15259 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 AL079307.3-201ENST00000556114 283 ntBASIC20.69■□□□□ 0.9
NPHP1O15259 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC20.69■□□□□ 0.9
NPHP1O15259 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.69■□□□□ 0.9
NPHP1O15259 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
NPHP1O15259 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC20.69■□□□□ 0.9
NPHP1O15259 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC20.69■□□□□ 0.9
NPHP1O15259 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP1O15259 AL671710.1-201ENST00000610245 2349 ntBASIC20.69■□□□□ 0.9
NPHP1O15259 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
NPHP1O15259 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
NPHP1O15259 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
NPHP1O15259 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.68■□□□□ 0.9
NPHP1O15259 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.68■□□□□ 0.9
NPHP1O15259 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.68■□□□□ 0.9
NPHP1O15259 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP1O15259 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP1O15259 DPM2-202ENST00000373110 738 ntTSL 2 BASIC20.68■□□□□ 0.9
NPHP1O15259 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP1O15259 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP1O15259 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 HILS1-202ENST00000545329 423 ntBASIC20.68■□□□□ 0.9
NPHP1O15259 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
NPHP1O15259 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP1O15259 IFT20-216ENST00000588477 774 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP1O15259 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC20.68■□□□□ 0.9
NPHP1O15259 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP1O15259 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
NPHP1O15259 GOLGA2P9-201ENST00000596977 1937 ntBASIC20.68■□□□□ 0.9
NPHP1O15259 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
NPHP1O15259 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP1O15259 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.67■□□□□ 0.9
NPHP1O15259 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
NPHP1O15259 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
NPHP1O15259 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms