Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SCN11AQ9UI33 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SCN11AQ9UI33 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SCN11AQ9UI33 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC20.82■□□□□ 0.92
SCN11AQ9UI33 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SCN11AQ9UI33 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SCN11AQ9UI33 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SCN11AQ9UI33 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SCN11AQ9UI33 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 AC009053.2-201ENST00000563701 2365 ntBASIC20.81■□□□□ 0.92
SCN11AQ9UI33 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 AC011495.1-201ENST00000498085 584 ntBASIC20.81■□□□□ 0.92
SCN11AQ9UI33 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN11AQ9UI33 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 AL442647.2-201ENST00000429864 857 ntBASIC20.8■□□□□ 0.92
SCN11AQ9UI33 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 RPL13P2-201ENST00000440687 659 ntBASIC20.8■□□□□ 0.92
SCN11AQ9UI33 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 AC124283.3-201ENST00000570869 594 ntBASIC20.8■□□□□ 0.92
SCN11AQ9UI33 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.8■□□□□ 0.92
SCN11AQ9UI33 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC20.8■□□□□ 0.92
SCN11AQ9UI33 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 ME2P1-201ENST00000426028 1970 ntBASIC20.79■□□□□ 0.92
SCN11AQ9UI33 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 AL162726.2-201ENST00000438986 1017 ntBASIC20.79■□□□□ 0.92
SCN11AQ9UI33 FXR1-221ENST00000491674 365 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 RAB43P1-201ENST00000561790 589 ntBASIC20.79■□□□□ 0.92
SCN11AQ9UI33 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC20.79■□□□□ 0.92
SCN11AQ9UI33 WNT11-204ENST00000621122 789 ntTSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms