Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 BCRP1-201ENST00000444246 691 ntBASIC17.66■□□□□ 0.42
CNTN3Q9P232 AC097493.3-201ENST00000509725 367 ntBASIC17.66■□□□□ 0.42
CNTN3Q9P232 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.66■□□□□ 0.42
CNTN3Q9P232 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.66■□□□□ 0.42
CNTN3Q9P232 BANF1P1-201ENST00000553684 263 ntBASIC17.66■□□□□ 0.42
CNTN3Q9P232 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.66■□□□□ 0.42
CNTN3Q9P232 AC024267.1-201ENST00000582320 895 ntBASIC17.66■□□□□ 0.42
CNTN3Q9P232 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CNTN3Q9P232 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.66■□□□□ 0.42
CNTN3Q9P232 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.66■□□□□ 0.42
CNTN3Q9P232 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.66■□□□□ 0.42
CNTN3Q9P232 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.66■□□□□ 0.42
CNTN3Q9P232 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
CNTN3Q9P232 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CNTN3Q9P232 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CNTN3Q9P232 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNTN3Q9P232 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNTN3Q9P232 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNTN3Q9P232 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CNTN3Q9P232 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNTN3Q9P232 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNTN3Q9P232 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNTN3Q9P232 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.66■□□□□ 0.42
CNTN3Q9P232 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 POU5F1P6-201ENST00000466990 990 ntBASIC17.65■□□□□ 0.42
CNTN3Q9P232 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 AL096865.1-201ENST00000606796 927 ntBASIC17.65■□□□□ 0.42
CNTN3Q9P232 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.65■□□□□ 0.42
CNTN3Q9P232 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CNTN3Q9P232 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
CNTN3Q9P232 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
CNTN3Q9P232 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 AC093214.1-201ENST00000511688 1107 ntBASIC17.64■□□□□ 0.41
CNTN3Q9P232 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 SPDYE12P-201ENST00000618416 771 ntBASIC17.64■□□□□ 0.41
CNTN3Q9P232 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CNTN3Q9P232 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.64■□□□□ 0.41
CNTN3Q9P232 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
CNTN3Q9P232 PCDHB19P-201ENST00000570871 2371 ntBASIC17.64■□□□□ 0.41
CNTN3Q9P232 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms