Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 TIMM8BP1-201ENST00000452384 211 ntBASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 YBX1P5-201ENST00000509441 847 ntBASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 MIR3687-2-201ENST00000577708 61 ntBASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 MIR3687-1-201ENST00000614492 61 ntBASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 AKAP8P1-201ENST00000434743 1349 ntBASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS54Q9P1Q0 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 ACTG1P14-201ENST00000446382 1122 ntBASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 AC093724.1-201ENST00000448659 1027 ntBASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 POU5F1P6-201ENST00000466990 990 ntBASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 AC026120.1-201ENST00000611536 926 ntBASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 AC018695.7-201ENST00000624587 2492 ntBASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS54Q9P1Q0 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 SPDYE11-202ENST00000450699 704 ntBASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 AC079140.1-201ENST00000508039 487 ntBASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 PRYP6-201ENST00000514804 343 ntBASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 SPDYE9P-201ENST00000570642 692 ntBASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 SPDYE10P-202ENST00000612005 668 ntBASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 SPDYE8P-202ENST00000612377 668 ntBASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 AC023511.2-201ENST00000618803 211 ntBASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS54Q9P1Q0 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS54Q9P1Q0 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS54Q9P1Q0 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS54Q9P1Q0 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS54Q9P1Q0 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS54Q9P1Q0 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS54Q9P1Q0 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS54Q9P1Q0 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
VPS54Q9P1Q0 KRT18P13-201ENST00000400056 1290 ntBASIC18.94■□□□□ 0.62
VPS54Q9P1Q0 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms