Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 AC006538.1-201ENST00000567905 1585 ntBASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 FAM86LP-201ENST00000478302 853 ntBASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 AGER-203ENST00000375065 665 ntTSL 2 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 OLR1-203ENST00000432556 950 ntTSL 2 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 AC006033.1-201ENST00000440505 426 ntBASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 RPL13P2-201ENST00000440687 659 ntBASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 IGHJ2P-201ENST00000454480 60 ntBASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 RN7SL560P-201ENST00000577943 264 ntBASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 AC091271.1-201ENST00000611877 1162 ntBASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 MSTO2P-201ENST00000314835 1709 ntBASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF541Q9H0D2 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 AL031731.1-201ENST00000642131 2094 ntBASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 AL355864.2-201ENST00000447420 863 ntBASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 KRT8P13-201ENST00000463294 1010 ntBASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 AC106760.1-201ENST00000508690 800 ntBASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 PAM16-215ENST00000577031 548 ntTSL 4 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 RN7SL190P-201ENST00000582519 257 ntBASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 AL118558.3-201ENST00000607414 1079 ntBASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
ZNF541Q9H0D2 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF541Q9H0D2 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms