Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
USP28Q96RU2 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP28Q96RU2 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP28Q96RU2 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP28Q96RU2 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.86■□□□□ 0.61
USP28Q96RU2 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.85■□□□□ 0.61
USP28Q96RU2 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
USP28Q96RU2 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC18.85■□□□□ 0.61
USP28Q96RU2 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
USP28Q96RU2 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.85■□□□□ 0.61
USP28Q96RU2 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.85■□□□□ 0.61
USP28Q96RU2 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
USP28Q96RU2 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC18.85■□□□□ 0.61
USP28Q96RU2 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
USP28Q96RU2 HYMAI-201ENST00000635591 3347 ntBASIC18.85■□□□□ 0.61
USP28Q96RU2 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.85■□□□□ 0.61
USP28Q96RU2 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.85■□□□□ 0.61
USP28Q96RU2 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.85■□□□□ 0.61
USP28Q96RU2 VN2R19P-201ENST00000442399 1052 ntBASIC18.85■□□□□ 0.61
USP28Q96RU2 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.85■□□□□ 0.61
USP28Q96RU2 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.85■□□□□ 0.61
USP28Q96RU2 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.85■□□□□ 0.61
USP28Q96RU2 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.85■□□□□ 0.61
USP28Q96RU2 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.85■□□□□ 0.61
USP28Q96RU2 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.85■□□□□ 0.61
USP28Q96RU2 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.85■□□□□ 0.61
USP28Q96RU2 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.85■□□□□ 0.61
USP28Q96RU2 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
USP28Q96RU2 AC069224.1-201ENST00000566372 1715 ntBASIC18.85■□□□□ 0.61
USP28Q96RU2 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.85■□□□□ 0.61
USP28Q96RU2 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
USP28Q96RU2 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
USP28Q96RU2 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP28Q96RU2 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.84■□□□□ 0.61
USP28Q96RU2 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
USP28Q96RU2 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
USP28Q96RU2 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.84■□□□□ 0.61
USP28Q96RU2 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.84■□□□□ 0.61
USP28Q96RU2 AL450487.1-201ENST00000426799 995 ntBASIC18.84■□□□□ 0.61
USP28Q96RU2 FAAHP1-202ENST00000446499 1238 ntBASIC18.84■□□□□ 0.61
USP28Q96RU2 HCG4B-203ENST00000450128 991 ntBASIC18.84■□□□□ 0.61
USP28Q96RU2 AL513480.1-201ENST00000451731 511 ntBASIC18.84■□□□□ 0.61
USP28Q96RU2 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.84■□□□□ 0.61
USP28Q96RU2 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.84■□□□□ 0.61
USP28Q96RU2 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.84■□□□□ 0.61
USP28Q96RU2 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.84■□□□□ 0.61
USP28Q96RU2 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
USP28Q96RU2 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
USP28Q96RU2 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.84■□□□□ 0.61
USP28Q96RU2 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
USP28Q96RU2 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.84■□□□□ 0.61
USP28Q96RU2 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
USP28Q96RU2 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.84■□□□□ 0.61
USP28Q96RU2 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.84■□□□□ 0.61
USP28Q96RU2 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
USP28Q96RU2 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
USP28Q96RU2 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP28Q96RU2 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.84■□□□□ 0.61
USP28Q96RU2 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.84■□□□□ 0.61
USP28Q96RU2 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP28Q96RU2 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP28Q96RU2 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP28Q96RU2 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.83■□□□□ 0.61
USP28Q96RU2 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP28Q96RU2 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
USP28Q96RU2 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP28Q96RU2 AP005117.1-202ENST00000581724 1908 ntBASIC18.83■□□□□ 0.6
USP28Q96RU2 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
USP28Q96RU2 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP28Q96RU2 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
USP28Q96RU2 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.83■□□□□ 0.6
USP28Q96RU2 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms