Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 ETV2-207ENST00000619399 994 ntTSL 5 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 TOMM22P5-201ENST00000416399 439 ntBASIC16.39■□□□□ 0.21
TTC28Q96AY4 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 FAM197Y7-201ENST00000432892 766 ntBASIC16.39■□□□□ 0.21
TTC28Q96AY4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 AC106794.1-201ENST00000506935 792 ntBASIC16.39■□□□□ 0.21
TTC28Q96AY4 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 AL161670.2-201ENST00000557650 1227 ntBASIC16.39■□□□□ 0.21
TTC28Q96AY4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 AL031598.1-201ENST00000561511 1773 ntBASIC16.39■□□□□ 0.21
TTC28Q96AY4 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 AL021920.2-201ENST00000624828 1351 ntBASIC16.38■□□□□ 0.21
TTC28Q96AY4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 LINC00304-203ENST00000565008 1864 ntBASIC16.38■□□□□ 0.21
TTC28Q96AY4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 Z97180.1-201ENST00000445173 988 ntBASIC16.38■□□□□ 0.21
TTC28Q96AY4 FGFR3P1-201ENST00000449999 601 ntBASIC16.38■□□□□ 0.21
TTC28Q96AY4 HOMER2P2-201ENST00000451621 847 ntBASIC16.38■□□□□ 0.21
TTC28Q96AY4 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 CD8B2-202ENST00000417670 633 ntBASIC16.38■□□□□ 0.21
TTC28Q96AY4 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.38■□□□□ 0.21
TTC28Q96AY4 FRMD8P1-201ENST00000440433 1524 ntBASIC16.38■□□□□ 0.21
TTC28Q96AY4 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TTC28Q96AY4 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TTC28Q96AY4 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TTC28Q96AY4 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TTC28Q96AY4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TTC28Q96AY4 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 AL118516.1-201ENST00000564152 670 ntBASIC16.37■□□□□ 0.21
TTC28Q96AY4 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TTC28Q96AY4 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 AC025271.4-201ENST00000621477 1726 ntBASIC16.37■□□□□ 0.21
TTC28Q96AY4 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TTC28Q96AY4 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TTC28Q96AY4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms