Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
PRKDCP78527 MIR769-201ENST00000390225 118 ntBASIC11.64□□□□□ -0.55
PRKDCP78527 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC11.64□□□□□ -0.55
PRKDCP78527 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC11.64□□□□□ -0.55
PRKDCP78527 AC027139.1-201ENST00000565286 951 ntBASIC11.64□□□□□ -0.55
PRKDCP78527 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC11.64□□□□□ -0.55
PRKDCP78527 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC11.64□□□□□ -0.55
PRKDCP78527 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC11.64□□□□□ -0.55
PRKDCP78527 AL353726.2-201ENST00000623259 884 ntBASIC11.64□□□□□ -0.55
PRKDCP78527 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC11.64□□□□□ -0.55
PRKDCP78527 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
PRKDCP78527 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 CD8B2-202ENST00000417670 633 ntBASIC11.64□□□□□ -0.55
PRKDCP78527 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC11.64□□□□□ -0.55
PRKDCP78527 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC11.64□□□□□ -0.55
PRKDCP78527 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC11.64□□□□□ -0.55
PRKDCP78527 RPSAP36-202ENST00000494591 1261 ntBASIC11.64□□□□□ -0.55
PRKDCP78527 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC11.64□□□□□ -0.55
PRKDCP78527 DGAT2L7P-201ENST00000602462 744 ntBASIC11.64□□□□□ -0.55
PRKDCP78527 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
PRKDCP78527 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC11.64□□□□□ -0.55
PRKDCP78527 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 AL139008.1-201ENST00000437894 228 ntBASIC11.63□□□□□ -0.55
PRKDCP78527 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
PRKDCP78527 AL596276.2-201ENST00000447525 331 ntBASIC11.63□□□□□ -0.55
PRKDCP78527 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 TPR-209ENST00000613151 2478 ntTSL 5 BASIC11.63□□□□□ -0.55
PRKDCP78527 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC11.63□□□□□ -0.55
PRKDCP78527 BRF1-202ENST00000379932 884 ntTSL 5 BASIC11.63□□□□□ -0.55
PRKDCP78527 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC11.63□□□□□ -0.55
PRKDCP78527 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 AC022217.1-201ENST00000521069 738 ntBASIC11.63□□□□□ -0.55
PRKDCP78527 AC024681.1-201ENST00000521917 487 ntBASIC11.63□□□□□ -0.55
PRKDCP78527 AC126915.1-201ENST00000522847 1038 ntBASIC11.63□□□□□ -0.55
PRKDCP78527 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC11.63□□□□□ -0.55
PRKDCP78527 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC11.63□□□□□ -0.55
PRKDCP78527 AC006453.4-201ENST00000636949 1252 ntBASIC11.63□□□□□ -0.55
PRKDCP78527 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC11.63□□□□□ -0.55
PRKDCP78527 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC11.63□□□□□ -0.55
PRKDCP78527 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC11.63□□□□□ -0.55
PRKDCP78527 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC11.63□□□□□ -0.55
PRKDCP78527 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC11.63□□□□□ -0.55
PRKDCP78527 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC11.63□□□□□ -0.55
PRKDCP78527 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC11.63□□□□□ -0.55
PRKDCP78527 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
PRKDCP78527 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC11.63□□□□□ -0.55
PRKDCP78527 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC11.63□□□□□ -0.55
PRKDCP78527 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC11.63□□□□□ -0.55
PRKDCP78527 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC11.63□□□□□ -0.55
PRKDCP78527 AL590640.2-201ENST00000457038 527 ntBASIC11.63□□□□□ -0.55
PRKDCP78527 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC11.63□□□□□ -0.55
PRKDCP78527 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
PRKDCP78527 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
PRKDCP78527 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
PRKDCP78527 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
PRKDCP78527 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
PRKDCP78527 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 AL139010.1-201ENST00000454878 894 ntBASIC11.62□□□□□ -0.55
PRKDCP78527 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC11.62□□□□□ -0.55
PRKDCP78527 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
PRKDCP78527 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
PRKDCP78527 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms