Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.27■□□□□ 0.2
SRP54P61011 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SRP54P61011 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SRP54P61011 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SRP54P61011 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
SRP54P61011 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SRP54P61011 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SRP54P61011 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SRP54P61011 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SRP54P61011 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SRP54P61011 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SRP54P61011 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.27■□□□□ 0.2
SRP54P61011 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
SRP54P61011 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.27■□□□□ 0.2
SRP54P61011 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SRP54P61011 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.27■□□□□ 0.2
SRP54P61011 AC055876.3-201ENST00000431496 288 ntBASIC16.27■□□□□ 0.2
SRP54P61011 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.27■□□□□ 0.2
SRP54P61011 AC093214.1-201ENST00000511688 1107 ntBASIC16.27■□□□□ 0.2
SRP54P61011 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.27■□□□□ 0.2
SRP54P61011 AC140878.1-201ENST00000565277 250 ntBASIC16.27■□□□□ 0.2
SRP54P61011 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.27■□□□□ 0.2
SRP54P61011 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.27■□□□□ 0.2
SRP54P61011 AC138649.4-201ENST00000612222 287 ntBASIC16.27■□□□□ 0.2
SRP54P61011 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SRP54P61011 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SRP54P61011 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SRP54P61011 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SRP54P61011 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
SRP54P61011 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SRP54P61011 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SRP54P61011 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.27■□□□□ 0.19
SRP54P61011 AC008894.3-201ENST00000624324 3103 ntBASIC16.27■□□□□ 0.19
SRP54P61011 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SRP54P61011 AC084018.2-201ENST00000613093 2607 ntBASIC16.27■□□□□ 0.19
SRP54P61011 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.27■□□□□ 0.19
SRP54P61011 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.27■□□□□ 0.19
SRP54P61011 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SRP54P61011 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SRP54P61011 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
SRP54P61011 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
SRP54P61011 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SRP54P61011 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.26■□□□□ 0.19
SRP54P61011 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.26■□□□□ 0.19
SRP54P61011 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.26■□□□□ 0.19
SRP54P61011 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SRP54P61011 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.26■□□□□ 0.19
SRP54P61011 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.26■□□□□ 0.19
SRP54P61011 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
SRP54P61011 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.26■□□□□ 0.19
SRP54P61011 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.26■□□□□ 0.19
SRP54P61011 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.26■□□□□ 0.19
SRP54P61011 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.26■□□□□ 0.19
SRP54P61011 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.26■□□□□ 0.19
SRP54P61011 RNA5SP421-201ENST00000516864 134 ntBASIC16.26■□□□□ 0.19
SRP54P61011 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.26■□□□□ 0.19
SRP54P61011 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.26■□□□□ 0.19
SRP54P61011 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.26■□□□□ 0.19
SRP54P61011 RARRES2P9-201ENST00000565168 469 ntBASIC16.26■□□□□ 0.19
SRP54P61011 MIR4453-201ENST00000584019 89 ntBASIC16.26■□□□□ 0.19
SRP54P61011 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.26■□□□□ 0.19
SRP54P61011 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
SRP54P61011 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.26■□□□□ 0.19
SRP54P61011 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.26■□□□□ 0.19
SRP54P61011 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.26■□□□□ 0.19
SRP54P61011 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.26■□□□□ 0.19
SRP54P61011 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SRP54P61011 AC073439.1-201ENST00000624121 1774 ntBASIC16.26■□□□□ 0.19
SRP54P61011 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.26■□□□□ 0.19
SRP54P61011 AP3S2-216ENST00000617003 1561 ntBASIC16.26■□□□□ 0.19
SRP54P61011 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SRP54P61011 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SRP54P61011 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.25■□□□□ 0.19
SRP54P61011 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SRP54P61011 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.25■□□□□ 0.19
SRP54P61011 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.25■□□□□ 0.19
SRP54P61011 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SRP54P61011 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SRP54P61011 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms