Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
FOXA3P55318 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 AC138035.3-201ENST00000622706 2791 ntBASIC12.46□□□□□ -0.42
FOXA3P55318 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
FOXA3P55318 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 ACE-203ENST00000413513 2237 ntTSL 2 BASIC12.45□□□□□ -0.42
FOXA3P55318 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC12.45□□□□□ -0.42
FOXA3P55318 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.45□□□□□ -0.42
FOXA3P55318 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.45□□□□□ -0.42
FOXA3P55318 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
FOXA3P55318 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
FOXA3P55318 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.45□□□□□ -0.42
FOXA3P55318 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
FOXA3P55318 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC12.45□□□□□ -0.42
FOXA3P55318 FAM201B-201ENST00000458407 597 ntBASIC12.45□□□□□ -0.42
FOXA3P55318 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
FOXA3P55318 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
FOXA3P55318 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC12.45□□□□□ -0.42
FOXA3P55318 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC12.45□□□□□ -0.42
FOXA3P55318 ITM2C-210ENST00000620962 501 ntBASIC12.45□□□□□ -0.42
FOXA3P55318 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC12.45□□□□□ -0.42
FOXA3P55318 PPT1-215ENST00000641471 2368 ntBASIC12.45□□□□□ -0.42
FOXA3P55318 AC023157.3-201ENST00000619086 2088 ntBASIC12.45□□□□□ -0.42
FOXA3P55318 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 FOS-208ENST00000555686 1496 ntTSL 2 BASIC12.45□□□□□ -0.42
FOXA3P55318 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.45□□□□□ -0.42
FOXA3P55318 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
FOXA3P55318 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC12.45□□□□□ -0.42
FOXA3P55318 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA3P55318 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC12.45□□□□□ -0.42
FOXA3P55318 AC125634.1-201ENST00000438758 1403 ntBASIC12.45□□□□□ -0.42
FOXA3P55318 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
FOXA3P55318 KRT8P49-201ENST00000604166 1432 ntBASIC12.45□□□□□ -0.42
FOXA3P55318 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC12.45□□□□□ -0.42
FOXA3P55318 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC12.45□□□□□ -0.42
FOXA3P55318 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
FOXA3P55318 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
FOXA3P55318 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 AC003669.1-201ENST00000334569 611 ntBASIC12.44□□□□□ -0.42
FOXA3P55318 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 MIR662-201ENST00000384847 95 ntBASIC12.44□□□□□ -0.42
FOXA3P55318 FAM220CP-201ENST00000395253 831 ntBASIC12.44□□□□□ -0.42
FOXA3P55318 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC12.44□□□□□ -0.42
FOXA3P55318 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC12.44□□□□□ -0.42
FOXA3P55318 FAM8A6P-201ENST00000407496 1135 ntBASIC12.44□□□□□ -0.42
FOXA3P55318 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
FOXA3P55318 AC098590.1-201ENST00000468126 897 ntBASIC12.44□□□□□ -0.42
FOXA3P55318 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
FOXA3P55318 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC12.44□□□□□ -0.42
FOXA3P55318 AC073912.3-201ENST00000624414 853 ntBASIC12.44□□□□□ -0.42
FOXA3P55318 AC139749.1-202ENST00000617529 3139 ntBASIC12.44□□□□□ -0.42
FOXA3P55318 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 CDC14C-201ENST00000428251 1719 ntBASIC12.44□□□□□ -0.42
FOXA3P55318 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC12.44□□□□□ -0.42
FOXA3P55318 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms