Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.14■□□□□ 0.33
EPHB3P54753 AL080243.2-201ENST00000418783 582 ntBASIC17.14■□□□□ 0.33
EPHB3P54753 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 AC005034.1-201ENST00000426657 489 ntBASIC17.14■□□□□ 0.33
EPHB3P54753 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.14■□□□□ 0.33
EPHB3P54753 AC005225.4-201ENST00000557330 545 ntBASIC17.14■□□□□ 0.33
EPHB3P54753 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.14■□□□□ 0.33
EPHB3P54753 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 AL844908.2-201ENST00000609461 460 ntBASIC17.14■□□□□ 0.33
EPHB3P54753 AC012645.4-201ENST00000610691 1061 ntBASIC17.14■□□□□ 0.33
EPHB3P54753 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.14■□□□□ 0.33
EPHB3P54753 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.14■□□□□ 0.33
EPHB3P54753 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.14■□□□□ 0.33
EPHB3P54753 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.14■□□□□ 0.33
EPHB3P54753 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 AC063926.2-201ENST00000623766 1308 ntBASIC17.14■□□□□ 0.33
EPHB3P54753 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
EPHB3P54753 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.14■□□□□ 0.33
EPHB3P54753 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.14■□□□□ 0.33
EPHB3P54753 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
EPHB3P54753 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
EPHB3P54753 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
EPHB3P54753 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.13■□□□□ 0.33
EPHB3P54753 AC005915.1-201ENST00000624912 2018 ntBASIC17.13■□□□□ 0.33
EPHB3P54753 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.13■□□□□ 0.33
EPHB3P54753 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.13■□□□□ 0.33
EPHB3P54753 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
EPHB3P54753 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
EPHB3P54753 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.13■□□□□ 0.33
EPHB3P54753 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.13■□□□□ 0.33
EPHB3P54753 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.13■□□□□ 0.33
EPHB3P54753 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.13■□□□□ 0.33
EPHB3P54753 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.13■□□□□ 0.33
EPHB3P54753 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.13■□□□□ 0.33
EPHB3P54753 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.13■□□□□ 0.33
EPHB3P54753 AC009407.1-201ENST00000568958 598 ntBASIC17.13■□□□□ 0.33
EPHB3P54753 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.13■□□□□ 0.33
EPHB3P54753 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.13■□□□□ 0.33
EPHB3P54753 AL035252.4-201ENST00000624174 288 ntBASIC17.13■□□□□ 0.33
EPHB3P54753 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.13■□□□□ 0.33
EPHB3P54753 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.13■□□□□ 0.33
EPHB3P54753 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
EPHB3P54753 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.13■□□□□ 0.33
EPHB3P54753 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
EPHB3P54753 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
EPHB3P54753 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
EPHB3P54753 AP001094.4-201ENST00000579008 2176 ntBASIC17.12■□□□□ 0.33
EPHB3P54753 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.12■□□□□ 0.33
EPHB3P54753 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.12■□□□□ 0.33
EPHB3P54753 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
EPHB3P54753 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
EPHB3P54753 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
EPHB3P54753 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.12■□□□□ 0.33
EPHB3P54753 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
EPHB3P54753 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
EPHB3P54753 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
EPHB3P54753 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
EPHB3P54753 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.12■□□□□ 0.33
EPHB3P54753 SPTLC1P1-201ENST00000447199 261 ntBASIC17.12■□□□□ 0.33
EPHB3P54753 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.12■□□□□ 0.33
EPHB3P54753 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.12■□□□□ 0.33
EPHB3P54753 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.12■□□□□ 0.33
EPHB3P54753 AC008738.7-201ENST00000609744 511 ntBASIC17.12■□□□□ 0.33
EPHB3P54753 AL358472.5-202ENST00000641448 1267 ntBASIC17.12■□□□□ 0.33
EPHB3P54753 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.12■□□□□ 0.33
EPHB3P54753 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.12■□□□□ 0.33
EPHB3P54753 LINC01144-201ENST00000626198 1710 ntBASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms