Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.59□□□□□ -0.07
SOX2P48431 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SOX2P48431 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
SOX2P48431 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SOX2P48431 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.59□□□□□ -0.07
SOX2P48431 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.59□□□□□ -0.07
SOX2P48431 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.59□□□□□ -0.07
SOX2P48431 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 BET1L-206ENST00000486280 665 ntTSL 3 BASIC14.59□□□□□ -0.07
SOX2P48431 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC14.59□□□□□ -0.07
SOX2P48431 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC14.59□□□□□ -0.07
SOX2P48431 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 AC064862.7-201ENST00000604520 867 ntBASIC14.59□□□□□ -0.07
SOX2P48431 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC14.59□□□□□ -0.07
SOX2P48431 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.59□□□□□ -0.07
SOX2P48431 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SOX2P48431 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.59□□□□□ -0.07
SOX2P48431 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.59□□□□□ -0.07
SOX2P48431 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SOX2P48431 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX2P48431 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SOX2P48431 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
SOX2P48431 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
SOX2P48431 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
SOX2P48431 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SOX2P48431 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SOX2P48431 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
SOX2P48431 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SOX2P48431 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
SOX2P48431 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
SOX2P48431 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SOX2P48431 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
SOX2P48431 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX2P48431 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX2P48431 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
SOX2P48431 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX2P48431 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC14.58□□□□□ -0.08
SOX2P48431 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SOX2P48431 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX2P48431 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC14.58□□□□□ -0.08
SOX2P48431 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.58□□□□□ -0.08
SOX2P48431 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX2P48431 MIR5100-201ENST00000579544 119 ntBASIC14.58□□□□□ -0.08
SOX2P48431 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 AC116407.4-201ENST00000623319 1061 ntBASIC14.58□□□□□ -0.08
SOX2P48431 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.58□□□□□ -0.08
SOX2P48431 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
SOX2P48431 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX2P48431 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SOX2P48431 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SOX2P48431 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 AC002310.6-201ENST00000624451 1377 ntBASIC14.58□□□□□ -0.08
SOX2P48431 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
SOX2P48431 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX2P48431 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.58□□□□□ -0.08
SOX2P48431 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX2P48431 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SOX2P48431 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SOX2P48431 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX2P48431 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX2P48431 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.57□□□□□ -0.08
SOX2P48431 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.57□□□□□ -0.08
SOX2P48431 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX2P48431 PC-214ENST00000628663 1470 ntTSL 5 BASIC14.57□□□□□ -0.08
SOX2P48431 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms