Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.11■□□□□ 0.33
PTPN9P43378 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PTPN9P43378 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 AL391005.1-201ENST00000623953 2435 ntBASIC17.11■□□□□ 0.33
PTPN9P43378 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PTPN9P43378 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PTPN9P43378 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PTPN9P43378 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PTPN9P43378 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
PTPN9P43378 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PTPN9P43378 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
PTPN9P43378 ELL2P1-201ENST00000413990 1906 ntBASIC17.1■□□□□ 0.33
PTPN9P43378 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.1■□□□□ 0.33
PTPN9P43378 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PTPN9P43378 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PTPN9P43378 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.1■□□□□ 0.33
PTPN9P43378 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PTPN9P43378 AC105233.2-201ENST00000523697 349 ntBASIC17.1■□□□□ 0.33
PTPN9P43378 AF228730.5-201ENST00000530288 346 ntBASIC17.1■□□□□ 0.33
PTPN9P43378 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
PTPN9P43378 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.1■□□□□ 0.33
PTPN9P43378 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
PTPN9P43378 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PTPN9P43378 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.1■□□□□ 0.33
PTPN9P43378 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.1■□□□□ 0.33
PTPN9P43378 AL589702.1-201ENST00000641229 1509 ntBASIC17.1■□□□□ 0.33
PTPN9P43378 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTPN9P43378 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PTPN9P43378 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
PTPN9P43378 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.09■□□□□ 0.33
PTPN9P43378 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PTPN9P43378 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
PTPN9P43378 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
PTPN9P43378 BX842568.4-201ENST00000421222 227 ntBASIC17.09■□□□□ 0.33
PTPN9P43378 SPDYE11-202ENST00000450699 704 ntBASIC17.09■□□□□ 0.33
PTPN9P43378 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.09■□□□□ 0.33
PTPN9P43378 KRT8P48-201ENST00000515599 1220 ntBASIC17.09■□□□□ 0.33
PTPN9P43378 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.09■□□□□ 0.33
PTPN9P43378 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.09■□□□□ 0.33
PTPN9P43378 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.09■□□□□ 0.33
PTPN9P43378 SPDYE9P-201ENST00000570642 692 ntBASIC17.09■□□□□ 0.33
PTPN9P43378 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PTPN9P43378 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.09■□□□□ 0.33
PTPN9P43378 SPDYE10P-202ENST00000612005 668 ntBASIC17.09■□□□□ 0.33
PTPN9P43378 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
PTPN9P43378 SPDYE8P-202ENST00000612377 668 ntBASIC17.09■□□□□ 0.33
PTPN9P43378 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.09■□□□□ 0.33
PTPN9P43378 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.09■□□□□ 0.33
PTPN9P43378 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.09■□□□□ 0.33
PTPN9P43378 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.09■□□□□ 0.33
PTPN9P43378 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.09■□□□□ 0.33
PTPN9P43378 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.09■□□□□ 0.33
PTPN9P43378 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.09■□□□□ 0.33
PTPN9P43378 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.09■□□□□ 0.33
PTPN9P43378 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 AC011270.2-201ENST00000624293 2550 ntBASIC17.09■□□□□ 0.33
PTPN9P43378 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTPN9P43378 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms