Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.18■□□□□ 0.5
HTTP42858 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HTTP42858 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
HTTP42858 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC18.18■□□□□ 0.5
HTTP42858 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC18.18■□□□□ 0.5
HTTP42858 KRT8P37-201ENST00000451609 1420 ntBASIC18.18■□□□□ 0.5
HTTP42858 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HTTP42858 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HTTP42858 AL627389.1-201ENST00000413508 1182 ntBASIC18.18■□□□□ 0.5
HTTP42858 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.18■□□□□ 0.5
HTTP42858 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
HTTP42858 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC18.18■□□□□ 0.5
HTTP42858 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HTTP42858 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.17■□□□□ 0.5
HTTP42858 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.17■□□□□ 0.5
HTTP42858 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HTTP42858 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC18.17■□□□□ 0.5
HTTP42858 CSH2-202ENST00000345366 598 ntTSL 5 BASIC18.17■□□□□ 0.5
HTTP42858 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC18.17■□□□□ 0.5
HTTP42858 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.17■□□□□ 0.5
HTTP42858 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.17■□□□□ 0.5
HTTP42858 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.17■□□□□ 0.5
HTTP42858 SOCS2P1-201ENST00000417727 557 ntBASIC18.17■□□□□ 0.5
HTTP42858 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HTTP42858 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC18.17■□□□□ 0.5
HTTP42858 AC013467.2-201ENST00000605472 835 ntBASIC18.17■□□□□ 0.5
HTTP42858 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HTTP42858 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HTTP42858 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HTTP42858 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.17■□□□□ 0.5
HTTP42858 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.17■□□□□ 0.5
HTTP42858 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HTTP42858 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.16■□□□□ 0.5
HTTP42858 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC18.16■□□□□ 0.5
HTTP42858 AC024267.1-201ENST00000582320 895 ntBASIC18.16■□□□□ 0.5
HTTP42858 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.16■□□□□ 0.5
HTTP42858 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC18.16■□□□□ 0.5
HTTP42858 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC18.16■□□□□ 0.5
HTTP42858 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HTTP42858 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.16■□□□□ 0.5
HTTP42858 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.16■□□□□ 0.5
HTTP42858 AP006547.1-201ENST00000563435 692 ntBASIC18.16■□□□□ 0.5
HTTP42858 KLK3-211ENST00000597483 810 ntTSL 2 BASIC18.16■□□□□ 0.5
HTTP42858 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.16■□□□□ 0.5
HTTP42858 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.16■□□□□ 0.5
HTTP42858 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC18.16■□□□□ 0.5
HTTP42858 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.16■□□□□ 0.5
HTTP42858 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.16■□□□□ 0.5
HTTP42858 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HTTP42858 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.15■□□□□ 0.5
HTTP42858 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC18.15■□□□□ 0.5
HTTP42858 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.15■□□□□ 0.5
HTTP42858 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC18.15■□□□□ 0.5
HTTP42858 RN7SL555P-201ENST00000584742 339 ntBASIC18.15■□□□□ 0.5
HTTP42858 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.15■□□□□ 0.5
HTTP42858 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.15■□□□□ 0.5
HTTP42858 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.15■□□□□ 0.5
HTTP42858 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
HTTP42858 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
HTTP42858 UPF3AP2-201ENST00000457924 1132 ntBASIC18.15■□□□□ 0.5
HTTP42858 ADM-202ENST00000524948 584 ntTSL 2 BASIC18.15■□□□□ 0.5
HTTP42858 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
HTTP42858 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HTTP42858 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HTTP42858 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HTTP42858 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
HTTP42858 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HTTP42858 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.5
HTTP42858 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms