Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 MIR6080-201ENST00000617359 66 ntBASIC15.67■□□□□ 0.1
RORAP35398 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.67■□□□□ 0.1
RORAP35398 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
RORAP35398 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RORAP35398 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RORAP35398 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RORAP35398 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RORAP35398 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RORAP35398 KRT8P39-201ENST00000396270 1433 ntBASIC15.67■□□□□ 0.1
RORAP35398 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RORAP35398 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RORAP35398 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RORAP35398 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
RORAP35398 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.67■□□□□ 0.1
RORAP35398 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
RORAP35398 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
RORAP35398 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
RORAP35398 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
RORAP35398 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
RORAP35398 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.66■□□□□ 0.1
RORAP35398 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
RORAP35398 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
RORAP35398 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.66■□□□□ 0.1
RORAP35398 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.66■□□□□ 0.1
RORAP35398 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.66■□□□□ 0.1
RORAP35398 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.66■□□□□ 0.1
RORAP35398 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.66■□□□□ 0.1
RORAP35398 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.66■□□□□ 0.1
RORAP35398 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.66■□□□□ 0.1
RORAP35398 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.66■□□□□ 0.1
RORAP35398 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.66■□□□□ 0.1
RORAP35398 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
RORAP35398 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RORAP35398 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.65■□□□□ 0.1
RORAP35398 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
RORAP35398 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 AL391256.1-201ENST00000443260 1855 ntBASIC15.65■□□□□ 0.1
RORAP35398 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
RORAP35398 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.65■□□□□ 0.1
RORAP35398 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
RORAP35398 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
RORAP35398 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.65■□□□□ 0.1
RORAP35398 FOXO1B-201ENST00000504678 1527 ntBASIC15.65■□□□□ 0.1
RORAP35398 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
RORAP35398 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.65■□□□□ 0.1
RORAP35398 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.65■□□□□ 0.1
RORAP35398 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.65■□□□□ 0.1
RORAP35398 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.65■□□□□ 0.1
RORAP35398 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.65■□□□□ 0.1
RORAP35398 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.65■□□□□ 0.1
RORAP35398 AC093214.1-201ENST00000511688 1107 ntBASIC15.65■□□□□ 0.1
RORAP35398 PRYP6-201ENST00000514804 343 ntBASIC15.65■□□□□ 0.1
RORAP35398 RNA5SP421-201ENST00000516864 134 ntBASIC15.65■□□□□ 0.1
RORAP35398 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.65■□□□□ 0.1
RORAP35398 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.65■□□□□ 0.1
RORAP35398 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.65■□□□□ 0.1
RORAP35398 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.65■□□□□ 0.1
RORAP35398 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RORAP35398 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms