Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
MSH5O43196 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
MSH5O43196 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC22.92■■□□□ 1.26
MSH5O43196 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
MSH5O43196 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH5O43196 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC22.92■■□□□ 1.26
MSH5O43196 LHX6-205ENST00000464484 666 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH5O43196 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC22.92■■□□□ 1.26
MSH5O43196 AC117522.2-201ENST00000510049 657 ntBASIC22.92■■□□□ 1.26
MSH5O43196 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH5O43196 AL352977.1-201ENST00000553464 453 ntTSL 5 BASIC22.92■■□□□ 1.26
MSH5O43196 AL391152.1-201ENST00000554160 1111 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH5O43196 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC22.92■■□□□ 1.26
MSH5O43196 COX5A-206ENST00000568783 571 ntTSL 3 BASIC22.92■■□□□ 1.26
MSH5O43196 AC061975.8-201ENST00000587058 721 ntBASIC22.92■■□□□ 1.26
MSH5O43196 AC096586.2-201ENST00000610260 441 ntBASIC22.92■■□□□ 1.26
MSH5O43196 AC092140.2-201ENST00000618027 521 ntBASIC22.92■■□□□ 1.26
MSH5O43196 AC253576.2-201ENST00000618815 580 ntBASIC22.92■■□□□ 1.26
MSH5O43196 AC010435.1-201ENST00000623353 1177 ntBASIC22.92■■□□□ 1.26
MSH5O43196 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 HEIH-201ENST00000623091 1652 ntBASIC22.92■■□□□ 1.26
MSH5O43196 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
MSH5O43196 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC22.92■■□□□ 1.26
MSH5O43196 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH5O43196 MMADHC-201ENST00000303319 1436 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH5O43196 HYKK-205ENST00000566332 1422 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
MSH5O43196 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
MSH5O43196 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
MSH5O43196 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH5O43196 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC22.91■■□□□ 1.26
MSH5O43196 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH5O43196 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH5O43196 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
MSH5O43196 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH5O43196 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC22.91■■□□□ 1.26
MSH5O43196 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH5O43196 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC22.91■■□□□ 1.26
MSH5O43196 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
MSH5O43196 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC22.91■■□□□ 1.26
MSH5O43196 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC22.91■■□□□ 1.26
MSH5O43196 BTBD7P2-201ENST00000441962 620 ntBASIC22.91■■□□□ 1.26
MSH5O43196 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC22.91■■□□□ 1.26
MSH5O43196 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC22.91■■□□□ 1.26
MSH5O43196 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
MSH5O43196 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC22.91■■□□□ 1.26
MSH5O43196 AC105202.1-203ENST00000518024 875 ntTSL 3 BASIC22.91■■□□□ 1.26
MSH5O43196 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC22.91■■□□□ 1.26
MSH5O43196 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC22.91■■□□□ 1.26
MSH5O43196 SDCCAG3P1-201ENST00000589292 1150 ntBASIC22.91■■□□□ 1.26
MSH5O43196 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC22.91■■□□□ 1.26
MSH5O43196 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC22.91■■□□□ 1.26
MSH5O43196 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC22.91■■□□□ 1.26
MSH5O43196 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH5O43196 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
MSH5O43196 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC22.91■■□□□ 1.26
MSH5O43196 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
MSH5O43196 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC22.9■■□□□ 1.26
MSH5O43196 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC22.9■■□□□ 1.26
MSH5O43196 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
MSH5O43196 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC22.9■■□□□ 1.26
MSH5O43196 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC22.9■■□□□ 1.26
MSH5O43196 AL121761.2-201ENST00000598007 1648 ntBASIC22.9■■□□□ 1.26
MSH5O43196 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC22.9■■□□□ 1.26
MSH5O43196 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC22.9■■□□□ 1.26
MSH5O43196 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC22.9■■□□□ 1.26
MSH5O43196 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
MSH5O43196 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
MSH5O43196 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
MSH5O43196 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
MSH5O43196 CD82-202ENST00000342935 967 ntTSL 5 BASIC22.9■■□□□ 1.26
MSH5O43196 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
MSH5O43196 RLN2-201ENST00000381627 1177 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
MSH5O43196 PACRG-AS3-201ENST00000419182 1131 ntTSL 2 BASIC22.9■■□□□ 1.26
MSH5O43196 AL354692.1-201ENST00000423044 315 ntBASIC22.9■■□□□ 1.26
MSH5O43196 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC22.9■■□□□ 1.26
MSH5O43196 RPS3AP6-201ENST00000484430 795 ntBASIC22.9■■□□□ 1.26
MSH5O43196 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC22.9■■□□□ 1.26
MSH5O43196 AC040174.2-201ENST00000602701 465 ntBASIC22.9■■□□□ 1.26
MSH5O43196 BOLA2P2-202ENST00000604904 567 ntBASIC22.9■■□□□ 1.26
MSH5O43196 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC22.9■■□□□ 1.26
MSH5O43196 AC068792.1-201ENST00000621354 417 ntBASIC22.9■■□□□ 1.26
MSH5O43196 AC044839.1-208ENST00000634902 917 ntTSL 5 BASIC22.9■■□□□ 1.26
MSH5O43196 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC22.9■■□□□ 1.26
MSH5O43196 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
MSH5O43196 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
MSH5O43196 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms