Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
ABCA3Q99758 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ABCA3Q99758 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ABCA3Q99758 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC21.5■■□□□ 1.03
ABCA3Q99758 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
ABCA3Q99758 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
ABCA3Q99758 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 ELK2AP-201ENST00000392510 1007 ntBASIC21.49■■□□□ 1.03
ABCA3Q99758 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC21.49■■□□□ 1.03
ABCA3Q99758 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC21.49■■□□□ 1.03
ABCA3Q99758 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC21.49■■□□□ 1.03
ABCA3Q99758 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC21.49■■□□□ 1.03
ABCA3Q99758 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
ABCA3Q99758 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC21.49■■□□□ 1.03
ABCA3Q99758 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.49■■□□□ 1.03
ABCA3Q99758 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC21.49■■□□□ 1.03
ABCA3Q99758 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.49■■□□□ 1.03
ABCA3Q99758 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC21.49■■□□□ 1.03
ABCA3Q99758 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA3Q99758 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC21.49■■□□□ 1.03
ABCA3Q99758 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC21.49■■□□□ 1.03
ABCA3Q99758 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ABCA3Q99758 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
ABCA3Q99758 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.48■■□□□ 1.03
ABCA3Q99758 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC21.48■■□□□ 1.03
ABCA3Q99758 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC21.48■■□□□ 1.03
ABCA3Q99758 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
ABCA3Q99758 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ABCA3Q99758 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC21.48■■□□□ 1.03
ABCA3Q99758 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
ABCA3Q99758 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.48■■□□□ 1.03
ABCA3Q99758 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ABCA3Q99758 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ABCA3Q99758 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
ABCA3Q99758 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
ABCA3Q99758 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ABCA3Q99758 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ABCA3Q99758 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
ABCA3Q99758 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC21.48■■□□□ 1.03
ABCA3Q99758 AC104306.2-201ENST00000451877 341 ntBASIC21.48■■□□□ 1.03
ABCA3Q99758 AL590640.2-201ENST00000457038 527 ntBASIC21.48■■□□□ 1.03
ABCA3Q99758 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC21.48■■□□□ 1.03
ABCA3Q99758 RPL13AP25-201ENST00000484130 612 ntBASIC21.48■■□□□ 1.03
ABCA3Q99758 RPL8-205ENST00000527914 551 ntTSL 3 BASIC21.48■■□□□ 1.03
ABCA3Q99758 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC21.48■■□□□ 1.03
ABCA3Q99758 AC025279.2-201ENST00000569730 653 ntBASIC21.48■■□□□ 1.03
ABCA3Q99758 AC000095.1-201ENST00000603208 874 ntBASIC21.48■■□□□ 1.03
ABCA3Q99758 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC21.48■■□□□ 1.03
ABCA3Q99758 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC21.48■■□□□ 1.03
ABCA3Q99758 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC21.48■■□□□ 1.03
ABCA3Q99758 AC008687.7-202ENST00000637404 953 ntBASIC21.48■■□□□ 1.03
ABCA3Q99758 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
ABCA3Q99758 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
ABCA3Q99758 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC21.48■■□□□ 1.03
ABCA3Q99758 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC21.48■■□□□ 1.03
ABCA3Q99758 USE1-206ENST00000595101 1776 ntTSL 2 BASIC21.48■■□□□ 1.03
ABCA3Q99758 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC21.47■■□□□ 1.03
ABCA3Q99758 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
ABCA3Q99758 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC21.47■■□□□ 1.03
ABCA3Q99758 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
ABCA3Q99758 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
ABCA3Q99758 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.47■■□□□ 1.03
ABCA3Q99758 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 REXO1L8P-201ENST00000604378 1897 ntBASIC21.47■■□□□ 1.03
ABCA3Q99758 AC067852.2-201ENST00000590513 2313 ntBASIC21.47■■□□□ 1.03
ABCA3Q99758 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
ABCA3Q99758 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
ABCA3Q99758 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA3Q99758 GRN-222ENST00000639447 1314 ntTSL 2 BASIC21.47■■□□□ 1.03
ABCA3Q99758 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
ABCA3Q99758 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms