Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 AC063926.3-201ENST00000624734 5658 ntBASIC17.87■□□□□ 0.45
CCDC42Q96M95 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC42Q96M95 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC42Q96M95 SLC22A20-204ENST00000530038 1673 ntBASIC17.87■□□□□ 0.45
CCDC42Q96M95 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 FAM210CP-201ENST00000445714 574 ntBASIC17.86■□□□□ 0.45
CCDC42Q96M95 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 MTDHP4-201ENST00000600287 670 ntBASIC17.86■□□□□ 0.45
CCDC42Q96M95 AC091076.1-201ENST00000610741 619 ntBASIC17.86■□□□□ 0.45
CCDC42Q96M95 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 AL353732.1-201ENST00000569618 1459 ntBASIC17.86■□□□□ 0.45
CCDC42Q96M95 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.86■□□□□ 0.45
CCDC42Q96M95 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC42Q96M95 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC42Q96M95 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 SLC25A6P2-201ENST00000497974 877 ntBASIC17.85■□□□□ 0.45
CCDC42Q96M95 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.85■□□□□ 0.45
CCDC42Q96M95 AL355877.3-201ENST00000622820 899 ntBASIC17.85■□□□□ 0.45
CCDC42Q96M95 AP001350.2-201ENST00000625104 1094 ntBASIC17.85■□□□□ 0.45
CCDC42Q96M95 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 NORAD-201ENST00000565493 5339 ntBASIC17.85■□□□□ 0.45
CCDC42Q96M95 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC42Q96M95 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.84■□□□□ 0.45
CCDC42Q96M95 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms