Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-3Q8TAU0 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-3Q8TAU0 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-3Q8TAU0 PCGF3-213ENST00000620529 1899 ntBASIC19.45■□□□□ 0.7
NKX2-3Q8TAU0 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-3Q8TAU0 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-3Q8TAU0 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.45■□□□□ 0.7
NKX2-3Q8TAU0 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-3Q8TAU0 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 CD81-202ENST00000381036 880 ntTSL 3 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 PIN1P1-201ENST00000412108 996 ntBASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 RBPMS2P1-201ENST00000437762 623 ntBASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 ATP5G2P4-201ENST00000442175 420 ntBASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 AC073389.1-201ENST00000595595 795 ntBASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.44■□□□□ 0.7
NKX2-3Q8TAU0 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 AL118508.1-201ENST00000613502 2345 ntBASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 AC093724.1-201ENST00000448659 1027 ntBASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 AL662799.1-202ENST00000614205 422 ntBASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
NKX2-3Q8TAU0 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 AC124067.4-201ENST00000519691 2379 ntBASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 NAA50-208ENST00000497255 789 ntTSL 5 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms