Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 SPDYE22P-201ENST00000582158 798 ntBASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 AC007967.4-201ENST00000614700 386 ntBASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 AC073592.8-201ENST00000624126 511 ntBASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDDC3Q8N4P3 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 FAM220BP-201ENST00000377689 816 ntBASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 AC004890.2-204ENST00000481968 304 ntBASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 RNA5SP410-201ENST00000516285 106 ntBASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDDC3Q8N4P3 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.52■□□□□ 0.23
HDDC3Q8N4P3 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 AL353705.2-201ENST00000428243 662 ntBASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 AC020765.3-201ENST00000613051 740 ntBASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDDC3Q8N4P3 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms