Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
KRT39Q6A163 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.82■□□□□ 0.44
KRT39Q6A163 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.82■□□□□ 0.44
KRT39Q6A163 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.82■□□□□ 0.44
KRT39Q6A163 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.82■□□□□ 0.44
KRT39Q6A163 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
KRT39Q6A163 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.81■□□□□ 0.44
KRT39Q6A163 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
KRT39Q6A163 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.81■□□□□ 0.44
KRT39Q6A163 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.81■□□□□ 0.44
KRT39Q6A163 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 RARRES2P8-201ENST00000566335 367 ntBASIC17.81■□□□□ 0.44
KRT39Q6A163 DOC2GP-204ENST00000639052 2548 ntBASIC17.81■□□□□ 0.44
KRT39Q6A163 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 REXO1L8P-201ENST00000604378 1897 ntBASIC17.81■□□□□ 0.44
KRT39Q6A163 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.81■□□□□ 0.44
KRT39Q6A163 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.81■□□□□ 0.44
KRT39Q6A163 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.81■□□□□ 0.44
KRT39Q6A163 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.81■□□□□ 0.44
KRT39Q6A163 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
KRT39Q6A163 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.81■□□□□ 0.44
KRT39Q6A163 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
KRT39Q6A163 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
KRT39Q6A163 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
KRT39Q6A163 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
KRT39Q6A163 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.8■□□□□ 0.44
KRT39Q6A163 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 FAM58CP-201ENST00000435741 640 ntBASIC17.8■□□□□ 0.44
KRT39Q6A163 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.8■□□□□ 0.44
KRT39Q6A163 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.8■□□□□ 0.44
KRT39Q6A163 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.8■□□□□ 0.44
KRT39Q6A163 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 MTDHP5-201ENST00000598980 586 ntBASIC17.8■□□□□ 0.44
KRT39Q6A163 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.8■□□□□ 0.44
KRT39Q6A163 AC006449.6-201ENST00000612330 2296 ntBASIC17.8■□□□□ 0.44
KRT39Q6A163 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
KRT39Q6A163 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.8■□□□□ 0.44
KRT39Q6A163 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.8■□□□□ 0.44
KRT39Q6A163 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
KRT39Q6A163 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.8■□□□□ 0.44
KRT39Q6A163 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.8■□□□□ 0.44
KRT39Q6A163 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
KRT39Q6A163 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.79■□□□□ 0.44
KRT39Q6A163 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
KRT39Q6A163 AC093724.1-201ENST00000448659 1027 ntBASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms