Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SF3A1Q15459 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.13■□□□□ 0.65
SF3A1Q15459 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 MIR1199-201ENST00000621445 119 ntBASIC19.13■□□□□ 0.65
SF3A1Q15459 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.13■□□□□ 0.65
SF3A1Q15459 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.13■□□□□ 0.65
SF3A1Q15459 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.13■□□□□ 0.65
SF3A1Q15459 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
SF3A1Q15459 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SF3A1Q15459 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SF3A1Q15459 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SF3A1Q15459 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.12■□□□□ 0.65
SF3A1Q15459 AC046158.3-201ENST00000624947 2558 ntBASIC19.12■□□□□ 0.65
SF3A1Q15459 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SF3A1Q15459 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SF3A1Q15459 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.12■□□□□ 0.65
SF3A1Q15459 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.12■□□□□ 0.65
SF3A1Q15459 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.12■□□□□ 0.65
SF3A1Q15459 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
SF3A1Q15459 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.12■□□□□ 0.65
SF3A1Q15459 GGT4P-201ENST00000623672 1708 ntBASIC19.12■□□□□ 0.65
SF3A1Q15459 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SF3A1Q15459 AL353732.1-201ENST00000569618 1459 ntBASIC19.12■□□□□ 0.65
SF3A1Q15459 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.12■□□□□ 0.65
SF3A1Q15459 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SF3A1Q15459 AF186996.4-201ENST00000467186 377 ntBASIC19.12■□□□□ 0.65
SF3A1Q15459 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.12■□□□□ 0.65
SF3A1Q15459 RN7SL510P-201ENST00000581311 263 ntBASIC19.12■□□□□ 0.65
SF3A1Q15459 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.12■□□□□ 0.65
SF3A1Q15459 CYP2A7P1-201ENST00000595391 815 ntBASIC19.12■□□□□ 0.65
SF3A1Q15459 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.12■□□□□ 0.65
SF3A1Q15459 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SF3A1Q15459 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
SF3A1Q15459 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC19.12■□□□□ 0.65
SF3A1Q15459 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SF3A1Q15459 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC19.12■□□□□ 0.65
SF3A1Q15459 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SF3A1Q15459 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SF3A1Q15459 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SF3A1Q15459 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SF3A1Q15459 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SF3A1Q15459 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.12■□□□□ 0.65
SF3A1Q15459 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SF3A1Q15459 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.12■□□□□ 0.65
SF3A1Q15459 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.12■□□□□ 0.65
SF3A1Q15459 FUK-207ENST00000571514 3054 ntTSL 2 BASIC19.11■□□□□ 0.65
SF3A1Q15459 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
SF3A1Q15459 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SF3A1Q15459 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.11■□□□□ 0.65
SF3A1Q15459 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.11■□□□□ 0.65
SF3A1Q15459 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.11■□□□□ 0.65
SF3A1Q15459 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.11■□□□□ 0.65
SF3A1Q15459 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.11■□□□□ 0.65
SF3A1Q15459 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SF3A1Q15459 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.11■□□□□ 0.65
SF3A1Q15459 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.11■□□□□ 0.65
SF3A1Q15459 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.11■□□□□ 0.65
SF3A1Q15459 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.11■□□□□ 0.65
SF3A1Q15459 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.11■□□□□ 0.65
SF3A1Q15459 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.11■□□□□ 0.65
SF3A1Q15459 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.11■□□□□ 0.65
SF3A1Q15459 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.11■□□□□ 0.65
SF3A1Q15459 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.11■□□□□ 0.65
SF3A1Q15459 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.11■□□□□ 0.65
SF3A1Q15459 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SF3A1Q15459 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SF3A1Q15459 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SF3A1Q15459 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SF3A1Q15459 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SF3A1Q15459 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SF3A1Q15459 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SF3A1Q15459 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms