Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
FOXA3P55318 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
FOXA3P55318 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
FOXA3P55318 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 AC112504.1-201ENST00000623415 1841 ntBASIC12.47□□□□□ -0.41
FOXA3P55318 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
FOXA3P55318 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 MDFI-202ENST00000373050 809 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC12.47□□□□□ -0.41
FOXA3P55318 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 ECEL1P3-201ENST00000427961 737 ntBASIC12.47□□□□□ -0.41
FOXA3P55318 TSPY7P-201ENST00000431358 1114 ntBASIC12.47□□□□□ -0.41
FOXA3P55318 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC12.47□□□□□ -0.41
FOXA3P55318 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
FOXA3P55318 GPR32P1-201ENST00000601788 811 ntBASIC12.47□□□□□ -0.41
FOXA3P55318 GLDC-219ENST00000640208 420 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
FOXA3P55318 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
FOXA3P55318 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.47□□□□□ -0.41
FOXA3P55318 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
FOXA3P55318 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.47□□□□□ -0.41
FOXA3P55318 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC12.47□□□□□ -0.41
FOXA3P55318 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
FOXA3P55318 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
FOXA3P55318 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
FOXA3P55318 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC12.46□□□□□ -0.41
FOXA3P55318 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
FOXA3P55318 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.46□□□□□ -0.41
FOXA3P55318 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
FOXA3P55318 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
FOXA3P55318 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
FOXA3P55318 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC12.46□□□□□ -0.41
FOXA3P55318 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
FOXA3P55318 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
FOXA3P55318 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC12.46□□□□□ -0.41
FOXA3P55318 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC12.46□□□□□ -0.41
FOXA3P55318 PRORSD1P-201ENST00000295112 541 ntBASIC12.46□□□□□ -0.41
FOXA3P55318 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
FOXA3P55318 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
FOXA3P55318 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
FOXA3P55318 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC12.46□□□□□ -0.41
FOXA3P55318 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC12.46□□□□□ -0.41
FOXA3P55318 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
FOXA3P55318 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC12.46□□□□□ -0.41
FOXA3P55318 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC12.46□□□□□ -0.41
FOXA3P55318 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC12.46□□□□□ -0.41
FOXA3P55318 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC12.46□□□□□ -0.41
FOXA3P55318 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC12.46□□□□□ -0.41
FOXA3P55318 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC12.46□□□□□ -0.41
FOXA3P55318 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC12.46□□□□□ -0.41
FOXA3P55318 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC12.46□□□□□ -0.41
FOXA3P55318 FAM87A-204ENST00000613235 858 ntBASIC12.46□□□□□ -0.41
FOXA3P55318 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
FOXA3P55318 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
FOXA3P55318 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
FOXA3P55318 AC097637.2-201ENST00000624096 1997 ntBASIC12.46□□□□□ -0.41
FOXA3P55318 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
FOXA3P55318 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.46□□□□□ -0.41
FOXA3P55318 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC12.46□□□□□ -0.42
FOXA3P55318 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
FOXA3P55318 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC12.46□□□□□ -0.42
FOXA3P55318 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
FOXA3P55318 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC12.46□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms