Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
HMGB1P09429 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
HMGB1P09429 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
HMGB1P09429 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGB1P09429 AC016027.1-202ENST00000607927 1699 ntBASIC19.46■□□□□ 0.71
HMGB1P09429 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGB1P09429 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
HMGB1P09429 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGB1P09429 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
HMGB1P09429 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.46■□□□□ 0.71
HMGB1P09429 AC093724.1-201ENST00000448659 1027 ntBASIC19.46■□□□□ 0.71
HMGB1P09429 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGB1P09429 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGB1P09429 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGB1P09429 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.46■□□□□ 0.71
HMGB1P09429 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.46■□□□□ 0.71
HMGB1P09429 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.46■□□□□ 0.71
HMGB1P09429 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGB1P09429 AC092865.6-201ENST00000642101 219 ntBASIC19.46■□□□□ 0.71
HMGB1P09429 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
HMGB1P09429 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGB1P09429 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
HMGB1P09429 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGB1P09429 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.45■□□□□ 0.7
HMGB1P09429 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
HMGB1P09429 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.45■□□□□ 0.7
HMGB1P09429 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.45■□□□□ 0.7
HMGB1P09429 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.45■□□□□ 0.7
HMGB1P09429 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.45■□□□□ 0.7
HMGB1P09429 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.45■□□□□ 0.7
HMGB1P09429 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
HMGB1P09429 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.45■□□□□ 0.7
HMGB1P09429 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HMGB1P09429 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
HMGB1P09429 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HMGB1P09429 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGB1P09429 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.44■□□□□ 0.7
HMGB1P09429 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.44■□□□□ 0.7
HMGB1P09429 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.44■□□□□ 0.7
HMGB1P09429 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.44■□□□□ 0.7
HMGB1P09429 AC018695.7-201ENST00000624587 2492 ntBASIC19.44■□□□□ 0.7
HMGB1P09429 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC19.44■□□□□ 0.7
HMGB1P09429 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
HMGB1P09429 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HMGB1P09429 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
HMGB1P09429 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.44■□□□□ 0.7
HMGB1P09429 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.44■□□□□ 0.7
HMGB1P09429 KRT18P58-201ENST00000527480 1120 ntBASIC19.44■□□□□ 0.7
HMGB1P09429 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
HMGB1P09429 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
HMGB1P09429 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGB1P09429 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms