Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
APOEP02649 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
APOEP02649 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
APOEP02649 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
APOEP02649 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 KRT8P39-201ENST00000396270 1433 ntBASIC17.32■□□□□ 0.36
APOEP02649 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.32■□□□□ 0.36
APOEP02649 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 AC211486.1-202ENST00000416371 468 ntBASIC17.32■□□□□ 0.36
APOEP02649 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.32■□□□□ 0.36
APOEP02649 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.32■□□□□ 0.36
APOEP02649 AC211476.1-201ENST00000503899 468 ntBASIC17.32■□□□□ 0.36
APOEP02649 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
APOEP02649 YBX1P5-201ENST00000509441 847 ntBASIC17.32■□□□□ 0.36
APOEP02649 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.32■□□□□ 0.36
APOEP02649 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.32■□□□□ 0.36
APOEP02649 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.32■□□□□ 0.36
APOEP02649 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
APOEP02649 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.32■□□□□ 0.36
APOEP02649 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.32■□□□□ 0.36
APOEP02649 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
APOEP02649 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
APOEP02649 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.32■□□□□ 0.36
APOEP02649 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
APOEP02649 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.32■□□□□ 0.36
APOEP02649 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.32■□□□□ 0.36
APOEP02649 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.32■□□□□ 0.36
APOEP02649 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.32■□□□□ 0.36
APOEP02649 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.32■□□□□ 0.36
APOEP02649 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
APOEP02649 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
APOEP02649 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
APOEP02649 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.31■□□□□ 0.36
APOEP02649 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
APOEP02649 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
APOEP02649 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
APOEP02649 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
APOEP02649 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.31■□□□□ 0.36
APOEP02649 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.31■□□□□ 0.36
APOEP02649 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.31■□□□□ 0.36
APOEP02649 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.31■□□□□ 0.36
APOEP02649 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.31■□□□□ 0.36
APOEP02649 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.31■□□□□ 0.36
APOEP02649 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.31■□□□□ 0.36
APOEP02649 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.31■□□□□ 0.36
APOEP02649 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.31■□□□□ 0.36
APOEP02649 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
APOEP02649 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 AL671710.1-201ENST00000610245 2349 ntBASIC17.31■□□□□ 0.36
APOEP02649 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
APOEP02649 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
APOEP02649 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.31■□□□□ 0.36
APOEP02649 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.3■□□□□ 0.36
APOEP02649 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.3■□□□□ 0.36
APOEP02649 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
APOEP02649 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
APOEP02649 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
APOEP02649 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
APOEP02649 PCDH8P1-201ENST00000428983 2773 ntBASIC17.3■□□□□ 0.36
APOEP02649 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
APOEP02649 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.3■□□□□ 0.36
APOEP02649 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms