Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RFPL4AP1-201ENST00000530883 850 ntBASIC18.47■□□□□ 0.55
MSH4O15457 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 AC027796.2-201ENST00000575326 344 ntBASIC18.47■□□□□ 0.55
MSH4O15457 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH4O15457 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH4O15457 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH4O15457 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH4O15457 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
MSH4O15457 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.47■□□□□ 0.55
MSH4O15457 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSH4O15457 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.46■□□□□ 0.55
MSH4O15457 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 AC079328.2-201ENST00000561241 3354 ntBASIC18.46■□□□□ 0.55
MSH4O15457 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.46■□□□□ 0.55
MSH4O15457 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
MSH4O15457 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
MSH4O15457 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.46■□□□□ 0.55
MSH4O15457 AC015911.4-201ENST00000588022 1070 ntBASIC18.46■□□□□ 0.55
MSH4O15457 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.46■□□□□ 0.55
MSH4O15457 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.46■□□□□ 0.55
MSH4O15457 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
MSH4O15457 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.46■□□□□ 0.55
MSH4O15457 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC18.46■□□□□ 0.55
MSH4O15457 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.46■□□□□ 0.55
MSH4O15457 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.46■□□□□ 0.55
MSH4O15457 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH4O15457 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
MSH4O15457 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
MSH4O15457 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.45■□□□□ 0.54
MSH4O15457 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.45■□□□□ 0.54
MSH4O15457 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
MSH4O15457 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.45■□□□□ 0.54
MSH4O15457 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.45■□□□□ 0.54
MSH4O15457 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.45■□□□□ 0.54
MSH4O15457 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 AC018529.1-201ENST00000613063 361 ntBASIC18.45■□□□□ 0.54
MSH4O15457 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.45■□□□□ 0.54
MSH4O15457 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.45■□□□□ 0.54
MSH4O15457 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.45■□□□□ 0.54
MSH4O15457 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
MSH4O15457 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.45■□□□□ 0.54
MSH4O15457 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
MSH4O15457 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 U82695.1-201ENST00000635752 1889 ntBASIC18.45■□□□□ 0.54
MSH4O15457 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.45■□□□□ 0.54
MSH4O15457 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH4O15457 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
MSH4O15457 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
MSH4O15457 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.44■□□□□ 0.54
MSH4O15457 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 REXO1L8P-201ENST00000604378 1897 ntBASIC18.44■□□□□ 0.54
MSH4O15457 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
MSH4O15457 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.44■□□□□ 0.54
MSH4O15457 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
MSH4O15457 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
MSH4O15457 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH4O15457 RNA5SP410-201ENST00000516285 106 ntBASIC18.44■□□□□ 0.54
MSH4O15457 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.44■□□□□ 0.54
MSH4O15457 AC061975.2-201ENST00000581722 295 ntBASIC18.44■□□□□ 0.54
MSH4O15457 MIR4453-201ENST00000584019 89 ntBASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms