Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.12□□□□□ -0.15
SDCBPO00560 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.12□□□□□ -0.15
SDCBPO00560 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
SDCBPO00560 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 GID4-202ENST00000376345 1391 ntTSL 3 BASIC14.12□□□□□ -0.15
SDCBPO00560 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SDCBPO00560 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 AC023824.1-201ENST00000562945 2975 ntBASIC14.12□□□□□ -0.15
SDCBPO00560 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC14.12□□□□□ -0.15
SDCBPO00560 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.12□□□□□ -0.15
SDCBPO00560 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC14.12□□□□□ -0.15
SDCBPO00560 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.12□□□□□ -0.15
SDCBPO00560 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.12□□□□□ -0.15
SDCBPO00560 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.12□□□□□ -0.15
SDCBPO00560 MTDHP3-201ENST00000594186 672 ntBASIC14.12□□□□□ -0.15
SDCBPO00560 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SDCBPO00560 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 AL022326.1-202ENST00000641533 845 ntBASIC14.12□□□□□ -0.15
SDCBPO00560 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.12□□□□□ -0.15
SDCBPO00560 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 AC126755.1-201ENST00000525846 6405 ntBASIC14.12□□□□□ -0.15
SDCBPO00560 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SDCBPO00560 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SDCBPO00560 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SDCBPO00560 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SDCBPO00560 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC14.11□□□□□ -0.15
SDCBPO00560 AL356309.3-201ENST00000624132 1934 ntBASIC14.11□□□□□ -0.15
SDCBPO00560 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.11□□□□□ -0.15
SDCBPO00560 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.11□□□□□ -0.15
SDCBPO00560 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.11□□□□□ -0.15
SDCBPO00560 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
SDCBPO00560 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.11□□□□□ -0.15
SDCBPO00560 LSM5-204ENST00000409909 740 ntTSL 2 BASIC14.11□□□□□ -0.15
SDCBPO00560 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC14.11□□□□□ -0.15
SDCBPO00560 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC14.11□□□□□ -0.15
SDCBPO00560 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC14.11□□□□□ -0.15
SDCBPO00560 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.11□□□□□ -0.15
SDCBPO00560 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 METTL23-204ENST00000586752 904 ntTSL 2 BASIC14.11□□□□□ -0.15
SDCBPO00560 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC14.11□□□□□ -0.15
SDCBPO00560 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.11□□□□□ -0.15
SDCBPO00560 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SDCBPO00560 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
SDCBPO00560 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.11□□□□□ -0.15
SDCBPO00560 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC14.11□□□□□ -0.15
SDCBPO00560 AC092384.3-202ENST00000564646 2873 ntBASIC14.11□□□□□ -0.15
SDCBPO00560 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 AL513477.1-201ENST00000602865 2407 ntBASIC14.11□□□□□ -0.15
SDCBPO00560 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.11□□□□□ -0.15
SDCBPO00560 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDCBPO00560 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.11□□□□□ -0.15
SDCBPO00560 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.1□□□□□ -0.15
SDCBPO00560 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
SDCBPO00560 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms