Protein–RNA interactions for Protein: Q9ULT6

ZNRF3, E3 ubiquitin-protein ligase ZNRF3, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNRF3Q9ULT6 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNRF3Q9ULT6 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.63■□□□□ 0.73
ZNRF3Q9ULT6 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ZNRF3Q9ULT6 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 AC093525.8-201ENST00000624099 1342 ntBASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 NME6-203ENST00000415644 849 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 CTBP2P5-201ENST00000454986 1264 ntBASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 AP002490.2-201ENST00000524791 560 ntBASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 GPR182-203ENST00000622922 591 ntBASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 AL031731.1-201ENST00000642131 2094 ntBASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNRF3Q9ULT6 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 PDIA3P1-201ENST00000471856 1510 ntBASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 LBX2-201ENST00000341396 886 ntTSL 3 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 USB1-203ENST00000539737 1212 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 PAM16-215ENST00000577031 548 ntTSL 4 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 RN7SL219P-201ENST00000582872 296 ntBASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 TECR-220ENST00000600083 1204 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 AL390961.4-201ENST00000623958 2535 ntBASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNRF3Q9ULT6 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 KRT8P44-201ENST00000441609 1350 ntBASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 KLF2P4-201ENST00000451959 1225 ntBASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 SUOX-214ENST00000551841 906 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.6■□□□□ 0.73
ZNRF3Q9ULT6 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms