Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 USP32P1-208ENST00000506594 1164 ntBASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 TECR-220ENST00000600083 1204 ntTSL 2 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 CD74-212ENST00000524315 584 ntTSL 5 BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 RRP7BP-205ENST00000566851 833 ntBASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 5S_rRNA.22-201ENST00000614916 106 ntBASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 MIR6775-201ENST00000617557 69 ntBASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 MIR6869-201ENST00000619434 62 ntBASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 TUBB1P2-201ENST00000422712 1306 ntBASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 TUBB1P1-201ENST00000503144 1300 ntBASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 AL603756.1-201ENST00000606511 2163 ntBASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC31.08■■■□□ 2.57
SHROOM4Q9ULL8 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 AC105021.1-202ENST00000570572 669 ntBASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
SHROOM4Q9ULL8 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 DPM2-202ENST00000373110 738 ntTSL 2 BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 HLA-DPB2-205ENST00000435074 1188 ntBASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 AL355994.2-201ENST00000447882 704 ntBASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
SHROOM4Q9ULL8 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SHROOM4Q9ULL8 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SHROOM4Q9ULL8 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC31.05■■■□□ 2.56
SHROOM4Q9ULL8 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC31.05■■■□□ 2.56
SHROOM4Q9ULL8 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC31.05■■■□□ 2.56
SHROOM4Q9ULL8 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SHROOM4Q9ULL8 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SHROOM4Q9ULL8 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
SHROOM4Q9ULL8 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SHROOM4Q9ULL8 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SHROOM4Q9ULL8 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SHROOM4Q9ULL8 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 RNF216P1-203ENST00000404404 2427 ntBASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 OSM-203ENST00000403463 464 ntTSL 3 BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 MTND6P24-201ENST00000440466 518 ntBASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms