Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 Z92544.3-201ENST00000624747 417 ntBASIC17.6■□□□□ 0.41
SIX4Q9UIU6 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 AC092364.2-201ENST00000596710 2692 ntBASIC17.6■□□□□ 0.41
SIX4Q9UIU6 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 REXO1L8P-201ENST00000604378 1897 ntBASIC17.59■□□□□ 0.41
SIX4Q9UIU6 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 AC008677.1-201ENST00000519230 1561 ntBASIC17.59■□□□□ 0.41
SIX4Q9UIU6 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 HLA-H-201ENST00000383620 1096 ntBASIC17.59■□□□□ 0.41
SIX4Q9UIU6 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 AC004449.1-201ENST00000564240 433 ntBASIC17.59■□□□□ 0.41
SIX4Q9UIU6 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX4Q9UIU6 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
SIX4Q9UIU6 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 AC069262.1-201ENST00000539058 672 ntBASIC17.58■□□□□ 0.4
SIX4Q9UIU6 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 U82695.1-201ENST00000635752 1889 ntBASIC17.58■□□□□ 0.4
SIX4Q9UIU6 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.58■□□□□ 0.4
SIX4Q9UIU6 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 AL592424.1-201ENST00000563624 1536 ntBASIC17.57■□□□□ 0.4
SIX4Q9UIU6 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SIX4Q9UIU6 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms