Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 AC104819.1-201ENST00000504587 486 ntBASIC14.51□□□□□ -0.09
NKX3-1Q99801 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 AC138894.3-201ENST00000603787 634 ntBASIC14.51□□□□□ -0.09
NKX3-1Q99801 AC064862.7-201ENST00000604520 867 ntBASIC14.51□□□□□ -0.09
NKX3-1Q99801 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NKX3-1Q99801 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
NKX3-1Q99801 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 AL021920.2-201ENST00000624828 1351 ntBASIC14.5□□□□□ -0.09
NKX3-1Q99801 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 AL590787.1-201ENST00000568856 1315 ntBASIC14.5□□□□□ -0.09
NKX3-1Q99801 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 AP001269.4-201ENST00000609611 512 ntBASIC14.5□□□□□ -0.09
NKX3-1Q99801 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 AC006277.1-201ENST00000624348 1610 ntBASIC14.5□□□□□ -0.09
NKX3-1Q99801 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 AC023824.1-201ENST00000562945 2975 ntBASIC14.5□□□□□ -0.09
NKX3-1Q99801 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 AC068587.6-202ENST00000641839 5619 ntBASIC14.5□□□□□ -0.09
NKX3-1Q99801 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NKX3-1Q99801 SNX33P1-201ENST00000592116 1762 ntBASIC14.5□□□□□ -0.09
NKX3-1Q99801 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
NKX3-1Q99801 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 KRT8P49-201ENST00000604166 1432 ntBASIC14.49□□□□□ -0.09
NKX3-1Q99801 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 AC079776.2-201ENST00000641154 1609 ntBASIC14.49□□□□□ -0.09
NKX3-1Q99801 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 SRP19-202ENST00000445150 833 ntTSL 2 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms