Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.21□□□□□ -0.13
COL12A1Q99715 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL12A1Q99715 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC14.21□□□□□ -0.13
COL12A1Q99715 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL12A1Q99715 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC14.21□□□□□ -0.13
COL12A1Q99715 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC14.21□□□□□ -0.13
COL12A1Q99715 MIR4750-201ENST00000584564 56 ntBASIC14.21□□□□□ -0.13
COL12A1Q99715 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC14.21□□□□□ -0.13
COL12A1Q99715 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
COL12A1Q99715 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL12A1Q99715 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL12A1Q99715 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
COL12A1Q99715 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
COL12A1Q99715 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC14.21□□□□□ -0.13
COL12A1Q99715 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
COL12A1Q99715 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL12A1Q99715 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
COL12A1Q99715 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL12A1Q99715 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC14.21□□□□□ -0.13
COL12A1Q99715 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
COL12A1Q99715 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.21□□□□□ -0.13
COL12A1Q99715 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL12A1Q99715 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL12A1Q99715 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC14.21□□□□□ -0.13
COL12A1Q99715 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL12A1Q99715 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL12A1Q99715 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL12A1Q99715 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL12A1Q99715 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL12A1Q99715 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL12A1Q99715 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL12A1Q99715 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC14.21□□□□□ -0.14
COL12A1Q99715 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL12A1Q99715 AC018735.1-201ENST00000437208 1502 ntBASIC14.21□□□□□ -0.14
COL12A1Q99715 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL12A1Q99715 AC138028.4-201ENST00000564984 1845 ntBASIC14.21□□□□□ -0.14
COL12A1Q99715 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC14.21□□□□□ -0.14
COL12A1Q99715 RARRES2P5-201ENST00000564013 466 ntBASIC14.21□□□□□ -0.14
COL12A1Q99715 AC104982.3-201ENST00000581995 514 ntBASIC14.21□□□□□ -0.14
COL12A1Q99715 MPDU1-223ENST00000582151 728 ntBASIC14.21□□□□□ -0.14
COL12A1Q99715 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC14.21□□□□□ -0.14
COL12A1Q99715 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.21□□□□□ -0.14
COL12A1Q99715 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC14.2□□□□□ -0.14
COL12A1Q99715 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC14.2□□□□□ -0.14
COL12A1Q99715 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.2□□□□□ -0.14
COL12A1Q99715 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 NDUFV2P1-201ENST00000596415 907 ntBASIC14.2□□□□□ -0.14
COL12A1Q99715 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 CROCCP2-202ENST00000412962 2773 ntBASIC14.2□□□□□ -0.14
COL12A1Q99715 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
COL12A1Q99715 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC14.2□□□□□ -0.14
COL12A1Q99715 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
COL12A1Q99715 FRMD8P1-201ENST00000440433 1524 ntBASIC14.2□□□□□ -0.14
COL12A1Q99715 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
COL12A1Q99715 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
COL12A1Q99715 SERF2-206ENST00000409291 807 ntTSL 3 BASIC14.2□□□□□ -0.14
COL12A1Q99715 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC14.2□□□□□ -0.14
COL12A1Q99715 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 FTLP10-202ENST00000505798 471 ntBASIC14.2□□□□□ -0.14
COL12A1Q99715 AC018635.2-201ENST00000608625 364 ntBASIC14.2□□□□□ -0.14
COL12A1Q99715 AP003419.4-201ENST00000616071 517 ntBASIC14.2□□□□□ -0.14
COL12A1Q99715 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL12A1Q99715 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC14.19□□□□□ -0.14
COL12A1Q99715 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
COL12A1Q99715 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.19□□□□□ -0.14
COL12A1Q99715 AC012313.1-201ENST00000593393 3059 ntBASIC14.19□□□□□ -0.14
COL12A1Q99715 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.19□□□□□ -0.14
COL12A1Q99715 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.19□□□□□ -0.14
COL12A1Q99715 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
COL12A1Q99715 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.19□□□□□ -0.14
COL12A1Q99715 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
COL12A1Q99715 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.19□□□□□ -0.14
COL12A1Q99715 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC14.19□□□□□ -0.14
COL12A1Q99715 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
COL12A1Q99715 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL12A1Q99715 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL12A1Q99715 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
COL12A1Q99715 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
COL12A1Q99715 MAGEA5-201ENST00000446757 942 ntBASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms