Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 PCDHB19P-201ENST00000570871 2371 ntBASIC18.67■□□□□ 0.58
CDK5RAP3Q96JB5 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 AL662844.4-201ENST00000606367 2838 ntBASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 MIR3909-201ENST00000579518 119 ntBASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 AC020765.3-201ENST00000613051 740 ntBASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 PCGF3-213ENST00000620529 1899 ntBASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDK5RAP3Q96JB5 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 AC005052.1-201ENST00000625181 2492 ntBASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDK5RAP3Q96JB5 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms