Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 AL138781.2-201ENST00000617896 1843 ntBASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 MIR7845-201ENST00000618396 99 ntBASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC1BQ8NDV3 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 CROCCP3-202ENST00000420820 1947 ntBASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 IGF1-203ENST00000392904 761 ntTSL 5 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 AC104457.1-201ENST00000401024 814 ntBASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 AC005077.2-201ENST00000449786 690 ntBASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 AC024267.1-201ENST00000582320 895 ntBASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 AL607033.1-201ENST00000623900 1599 ntBASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC1BQ8NDV3 AC138028.6-201ENST00000616106 1482 ntBASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 AC026954.1-201ENST00000429771 1293 ntBASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 SCARNA20.5-201ENST00000516991 142 ntBASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMC1BQ8NDV3 KRT8P19-201ENST00000551916 1455 ntBASIC19.41■□□□□ 0.7
SMC1BQ8NDV3 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms