Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTL3Q8N8U3 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTL3Q8N8U3 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTL3Q8N8U3 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RTL3Q8N8U3 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
RTL3Q8N8U3 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.94■□□□□ 0.3
RTL3Q8N8U3 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.94■□□□□ 0.3
RTL3Q8N8U3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTL3Q8N8U3 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RTL3Q8N8U3 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
RTL3Q8N8U3 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 MIR1233-2-201ENST00000408138 82 ntBASIC16.93■□□□□ 0.3
RTL3Q8N8U3 MIR1233-1-201ENST00000408722 82 ntBASIC16.93■□□□□ 0.3
RTL3Q8N8U3 AC211486.1-202ENST00000416371 468 ntBASIC16.93■□□□□ 0.3
RTL3Q8N8U3 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 AC211476.1-201ENST00000503899 468 ntBASIC16.93■□□□□ 0.3
RTL3Q8N8U3 AC079140.1-201ENST00000508039 487 ntBASIC16.93■□□□□ 0.3
RTL3Q8N8U3 PRYP6-201ENST00000514804 343 ntBASIC16.93■□□□□ 0.3
RTL3Q8N8U3 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 AC105339.1-204ENST00000636249 355 ntBASIC16.93■□□□□ 0.3
RTL3Q8N8U3 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
RTL3Q8N8U3 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 SPCS2P4-201ENST00000436160 681 ntBASIC16.92■□□□□ 0.3
RTL3Q8N8U3 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 AC093724.1-201ENST00000448659 1027 ntBASIC16.92■□□□□ 0.3
RTL3Q8N8U3 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 AL138918.1-201ENST00000568306 659 ntBASIC16.92■□□□□ 0.3
RTL3Q8N8U3 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 AC008267.7-201ENST00000624570 1194 ntBASIC16.92■□□□□ 0.3
RTL3Q8N8U3 AL513210.1-201ENST00000629608 234 ntBASIC16.92■□□□□ 0.3
RTL3Q8N8U3 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.92■□□□□ 0.3
RTL3Q8N8U3 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RTL3Q8N8U3 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.91■□□□□ 0.3
RTL3Q8N8U3 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
RTL3Q8N8U3 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
RTL3Q8N8U3 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
RTL3Q8N8U3 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
RTL3Q8N8U3 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.91■□□□□ 0.3
RTL3Q8N8U3 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
RTL3Q8N8U3 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
RTL3Q8N8U3 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms