Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC116Q8IYX3 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC116Q8IYX3 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CCDC116Q8IYX3 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC116Q8IYX3 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.63■□□□□ 0.09
CCDC116Q8IYX3 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC116Q8IYX3 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC116Q8IYX3 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 AC018695.7-201ENST00000624587 2492 ntBASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 DOC2GP-204ENST00000639052 2548 ntBASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 AC025580.3-201ENST00000617932 1424 ntBASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 RNU1-129P-201ENST00000384064 167 ntBASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 AC106730.1-201ENST00000566722 1090 ntBASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 U1.21-201ENST00000580816 167 ntBASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 PCGF3-213ENST00000620529 1899 ntBASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 BCAR1-209ENST00000546196 1340 ntBASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC116Q8IYX3 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 AL031055.1-201ENST00000606362 631 ntBASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC116Q8IYX3 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms