Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC129492.6-201ENST00000611383 1305 ntBASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 PCDH8P1-201ENST00000428983 2773 ntBASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SH3RF1Q7Z6J0 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 AL391005.1-201ENST00000623953 2435 ntBASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 AL512638.1-201ENST00000457493 794 ntBASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 LINC01225-203ENST00000563550 1244 ntBASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.88■□□□□ 0.61
SH3RF1Q7Z6J0 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 SERBP1P5-201ENST00000510079 1181 ntBASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 MPDU1-223ENST00000582151 728 ntBASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 AL645728.2-201ENST00000641974 660 ntBASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.87■□□□□ 0.61
SH3RF1Q7Z6J0 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms