Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMK1P53667 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMK1P53667 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMK1P53667 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.29■□□□□ 0.2
LIMK1P53667 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMK1P53667 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMK1P53667 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMK1P53667 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIMK1P53667 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMK1P53667 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMK1P53667 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMK1P53667 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.28■□□□□ 0.2
LIMK1P53667 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMK1P53667 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LIMK1P53667 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMK1P53667 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMK1P53667 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIMK1P53667 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
LIMK1P53667 AC234783.1-201ENST00000441761 496 ntBASIC16.28■□□□□ 0.2
LIMK1P53667 RN7SL837P-201ENST00000463010 287 ntBASIC16.28■□□□□ 0.2
LIMK1P53667 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMK1P53667 AC119751.2-201ENST00000504529 210 ntBASIC16.28■□□□□ 0.2
LIMK1P53667 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.28■□□□□ 0.2
LIMK1P53667 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMK1P53667 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC16.28■□□□□ 0.2
LIMK1P53667 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.28■□□□□ 0.2
LIMK1P53667 WASH4P-201ENST00000564273 1246 ntBASIC16.28■□□□□ 0.2
LIMK1P53667 MIR4259-201ENST00000584466 101 ntBASIC16.28■□□□□ 0.2
LIMK1P53667 AC133552.6-201ENST00000613406 534 ntBASIC16.28■□□□□ 0.2
LIMK1P53667 AP001350.2-201ENST00000625104 1094 ntBASIC16.28■□□□□ 0.2
LIMK1P53667 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMK1P53667 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMK1P53667 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 REXO1L6P-201ENST00000603433 1515 ntBASIC16.28■□□□□ 0.2
LIMK1P53667 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 PCDHB19P-201ENST00000570871 2371 ntBASIC16.28■□□□□ 0.2
LIMK1P53667 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMK1P53667 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
LIMK1P53667 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMK1P53667 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMK1P53667 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
LIMK1P53667 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LIMK1P53667 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LIMK1P53667 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.27■□□□□ 0.2
LIMK1P53667 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
LIMK1P53667 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMK1P53667 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMK1P53667 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
LIMK1P53667 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.27■□□□□ 0.2
LIMK1P53667 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMK1P53667 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMK1P53667 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMK1P53667 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.27■□□□□ 0.2
LIMK1P53667 AGGF1P2-201ENST00000426656 2106 ntBASIC16.27■□□□□ 0.2
LIMK1P53667 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
LIMK1P53667 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.2
LIMK1P53667 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.27■□□□□ 0.2
LIMK1P53667 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
LIMK1P53667 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMK1P53667 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LIMK1P53667 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.27■□□□□ 0.2
LIMK1P53667 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMK1P53667 AC004945.1-201ENST00000416738 983 ntBASIC16.27■□□□□ 0.2
LIMK1P53667 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.27■□□□□ 0.2
LIMK1P53667 DOC2GP-202ENST00000514950 1163 ntBASIC16.27■□□□□ 0.2
LIMK1P53667 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.27■□□□□ 0.2
LIMK1P53667 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMK1P53667 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.27■□□□□ 0.2
LIMK1P53667 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.27■□□□□ 0.2
LIMK1P53667 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMK1P53667 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMK1P53667 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.27■□□□□ 0.19
LIMK1P53667 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMK1P53667 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.27■□□□□ 0.19
LIMK1P53667 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMK1P53667 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMK1P53667 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
LIMK1P53667 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMK1P53667 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMK1P53667 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.26■□□□□ 0.19
LIMK1P53667 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIMK1P53667 AL138688.1-201ENST00000624851 1594 ntBASIC16.26■□□□□ 0.19
LIMK1P53667 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.26■□□□□ 0.19
LIMK1P53667 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LIMK1P53667 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.26■□□□□ 0.19
LIMK1P53667 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms