Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC19.04■□□□□ 0.64
CTCFP49711 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.04■□□□□ 0.64
CTCFP49711 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC19.04■□□□□ 0.64
CTCFP49711 AC021097.1-201ENST00000607902 574 ntBASIC19.04■□□□□ 0.64
CTCFP49711 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC19.04■□□□□ 0.64
CTCFP49711 AL033527.5-202ENST00000641632 1098 ntBASIC19.04■□□□□ 0.64
CTCFP49711 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.04■□□□□ 0.64
CTCFP49711 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
CTCFP49711 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
CTCFP49711 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.03■□□□□ 0.64
CTCFP49711 AKR7A2P1-201ENST00000460134 915 ntBASIC19.03■□□□□ 0.64
CTCFP49711 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.03■□□□□ 0.64
CTCFP49711 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.03■□□□□ 0.64
CTCFP49711 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.03■□□□□ 0.64
CTCFP49711 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 AC091167.2-201ENST00000579581 588 ntBASIC19.03■□□□□ 0.64
CTCFP49711 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 AC020765.3-201ENST00000613051 740 ntBASIC19.03■□□□□ 0.64
CTCFP49711 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.03■□□□□ 0.64
CTCFP49711 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CTCFP49711 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC19.03■□□□□ 0.64
CTCFP49711 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.03■□□□□ 0.64
CTCFP49711 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.03■□□□□ 0.64
CTCFP49711 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC19.03■□□□□ 0.64
CTCFP49711 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
CTCFP49711 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.03■□□□□ 0.64
CTCFP49711 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.03■□□□□ 0.64
CTCFP49711 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTCFP49711 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
CTCFP49711 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC19.02■□□□□ 0.64
CTCFP49711 AC092978.1-202ENST00000637590 1327 ntBASIC19.02■□□□□ 0.64
CTCFP49711 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 LBH-202ENST00000401506 485 ntTSL 3 BASIC19.02■□□□□ 0.64
CTCFP49711 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC19.02■□□□□ 0.64
CTCFP49711 BCRP2-202ENST00000447763 634 ntBASIC19.02■□□□□ 0.64
CTCFP49711 BCRP6-201ENST00000510112 632 ntBASIC19.02■□□□□ 0.64
CTCFP49711 BCRP7-201ENST00000511549 544 ntBASIC19.02■□□□□ 0.64
CTCFP49711 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC19.02■□□□□ 0.64
CTCFP49711 AC079316.1-201ENST00000548397 411 ntBASIC19.02■□□□□ 0.64
CTCFP49711 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC19.02■□□□□ 0.64
CTCFP49711 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC19.02■□□□□ 0.64
CTCFP49711 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.02■□□□□ 0.64
CTCFP49711 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.02■□□□□ 0.64
CTCFP49711 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.02■□□□□ 0.64
CTCFP49711 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.02■□□□□ 0.64
CTCFP49711 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CTCFP49711 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTCFP49711 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.02■□□□□ 0.63
CTCFP49711 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CTCFP49711 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
CTCFP49711 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.63
CTCFP49711 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CTCFP49711 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
CTCFP49711 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CTCFP49711 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.02■□□□□ 0.63
CTCFP49711 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CTCFP49711 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.01■□□□□ 0.63
CTCFP49711 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CTCFP49711 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.01■□□□□ 0.63
CTCFP49711 AC008764.6-201ENST00000595909 2069 ntBASIC19.01■□□□□ 0.63
CTCFP49711 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CTCFP49711 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC19.01■□□□□ 0.63
CTCFP49711 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CTCFP49711 ACTG1P3-201ENST00000431775 1114 ntBASIC19.01■□□□□ 0.63
CTCFP49711 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTCFP49711 RNA5SP410-201ENST00000516285 106 ntBASIC19.01■□□□□ 0.63
CTCFP49711 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms