Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
NKX2-1P43699 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
NKX2-1P43699 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC13.61□□□□□ -0.23
NKX2-1P43699 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
NKX2-1P43699 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.61□□□□□ -0.23
NKX2-1P43699 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
NKX2-1P43699 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
NKX2-1P43699 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.61□□□□□ -0.23
NKX2-1P43699 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.61□□□□□ -0.23
NKX2-1P43699 AC006058.4-201ENST00000624016 1670 ntBASIC13.61□□□□□ -0.23
NKX2-1P43699 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC13.61□□□□□ -0.23
NKX2-1P43699 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 TERF1P1-201ENST00000311003 1181 ntBASIC13.61□□□□□ -0.23
NKX2-1P43699 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
NKX2-1P43699 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 AP002414.1-201ENST00000391405 1147 ntBASIC13.61□□□□□ -0.23
NKX2-1P43699 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC13.61□□□□□ -0.23
NKX2-1P43699 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.61□□□□□ -0.23
NKX2-1P43699 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC13.61□□□□□ -0.23
NKX2-1P43699 VENTXP5-201ENST00000523979 775 ntBASIC13.61□□□□□ -0.23
NKX2-1P43699 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC13.61□□□□□ -0.23
NKX2-1P43699 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
NKX2-1P43699 AD001527.2-201ENST00000622994 785 ntBASIC13.61□□□□□ -0.23
NKX2-1P43699 AC011558.1-201ENST00000623459 338 ntBASIC13.61□□□□□ -0.23
NKX2-1P43699 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
NKX2-1P43699 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.61□□□□□ -0.23
NKX2-1P43699 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
NKX2-1P43699 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
NKX2-1P43699 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.61□□□□□ -0.23
NKX2-1P43699 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC13.61□□□□□ -0.23
NKX2-1P43699 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC13.61□□□□□ -0.23
NKX2-1P43699 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
NKX2-1P43699 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX2-1P43699 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC13.61□□□□□ -0.23
NKX2-1P43699 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC13.6□□□□□ -0.23
NKX2-1P43699 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.6□□□□□ -0.23
NKX2-1P43699 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
NKX2-1P43699 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 HNRNPRP1-201ENST00000453465 1695 ntBASIC13.6□□□□□ -0.23
NKX2-1P43699 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 SBF1P1-201ENST00000444527 5631 ntBASIC13.6□□□□□ -0.23
NKX2-1P43699 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
NKX2-1P43699 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.6□□□□□ -0.23
NKX2-1P43699 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.6□□□□□ -0.23
NKX2-1P43699 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
NKX2-1P43699 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC13.6□□□□□ -0.23
NKX2-1P43699 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 AC211429.1-201ENST00000415277 523 ntBASIC13.6□□□□□ -0.23
NKX2-1P43699 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC13.6□□□□□ -0.23
NKX2-1P43699 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC13.6□□□□□ -0.23
NKX2-1P43699 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC13.6□□□□□ -0.23
NKX2-1P43699 AC009533.2-201ENST00000543664 586 ntBASIC13.6□□□□□ -0.23
NKX2-1P43699 AC011840.4-201ENST00000578471 627 ntBASIC13.6□□□□□ -0.23
NKX2-1P43699 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC13.6□□□□□ -0.23
NKX2-1P43699 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC13.6□□□□□ -0.23
NKX2-1P43699 AL671710.1-201ENST00000610245 2349 ntBASIC13.6□□□□□ -0.23
NKX2-1P43699 AC124864.1-201ENST00000623408 392 ntBASIC13.6□□□□□ -0.23
NKX2-1P43699 WDR6-223ENST00000627177 207 ntTSL 2 BASIC13.6□□□□□ -0.23
NKX2-1P43699 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC13.6□□□□□ -0.23
NKX2-1P43699 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
NKX2-1P43699 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX2-1P43699 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms