Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.15■□□□□ 0.18
HDAC3O15379 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HDAC3O15379 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.15■□□□□ 0.18
HDAC3O15379 AC073347.1-201ENST00000421633 2643 ntBASIC16.15■□□□□ 0.18
HDAC3O15379 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.18
HDAC3O15379 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
HDAC3O15379 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HDAC3O15379 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.14■□□□□ 0.17
HDAC3O15379 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.14■□□□□ 0.17
HDAC3O15379 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.14■□□□□ 0.17
HDAC3O15379 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HDAC3O15379 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.14■□□□□ 0.17
HDAC3O15379 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 TMPOP1-202ENST00000424642 1267 ntBASIC16.14■□□□□ 0.17
HDAC3O15379 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.14■□□□□ 0.17
HDAC3O15379 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.14■□□□□ 0.17
HDAC3O15379 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 AC012615.1-201ENST00000565797 1299 ntBASIC16.14■□□□□ 0.17
HDAC3O15379 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.14■□□□□ 0.17
HDAC3O15379 CYP2A7P1-201ENST00000595391 815 ntBASIC16.14■□□□□ 0.17
HDAC3O15379 AC099336.1-202ENST00000602961 463 ntBASIC16.14■□□□□ 0.17
HDAC3O15379 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.14■□□□□ 0.17
HDAC3O15379 AL591684.3-201ENST00000605187 298 ntBASIC16.14■□□□□ 0.17
HDAC3O15379 AL589182.2-201ENST00000619332 1049 ntBASIC16.14■□□□□ 0.17
HDAC3O15379 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 AF228730.7-201ENST00000641842 219 ntBASIC16.14■□□□□ 0.17
HDAC3O15379 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.14■□□□□ 0.17
HDAC3O15379 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.14■□□□□ 0.17
HDAC3O15379 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.14■□□□□ 0.17
HDAC3O15379 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.14■□□□□ 0.17
HDAC3O15379 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
HDAC3O15379 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDAC3O15379 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.13■□□□□ 0.17
HDAC3O15379 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 PRAL-201ENST00000624952 3286 ntBASIC16.13■□□□□ 0.17
HDAC3O15379 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
HDAC3O15379 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HDAC3O15379 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.13■□□□□ 0.17
HDAC3O15379 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.13■□□□□ 0.17
HDAC3O15379 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 MIR648-201ENST00000385046 94 ntBASIC16.13■□□□□ 0.17
HDAC3O15379 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.13■□□□□ 0.17
HDAC3O15379 AP000867.3-201ENST00000524675 377 ntBASIC16.13■□□□□ 0.17
HDAC3O15379 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.13■□□□□ 0.17
HDAC3O15379 AP001269.4-201ENST00000609611 512 ntBASIC16.13■□□□□ 0.17
HDAC3O15379 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
HDAC3O15379 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.13■□□□□ 0.17
HDAC3O15379 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HDAC3O15379 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.13■□□□□ 0.17
HDAC3O15379 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HDAC3O15379 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.13■□□□□ 0.17
HDAC3O15379 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDAC3O15379 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDAC3O15379 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDAC3O15379 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HDAC3O15379 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDAC3O15379 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.12■□□□□ 0.17
HDAC3O15379 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.12■□□□□ 0.17
HDAC3O15379 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDAC3O15379 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDAC3O15379 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDAC3O15379 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDAC3O15379 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HDAC3O15379 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDAC3O15379 SLC22A20-204ENST00000530038 1673 ntBASIC16.12■□□□□ 0.17
HDAC3O15379 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.12■□□□□ 0.17
HDAC3O15379 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.12■□□□□ 0.17
HDAC3O15379 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
HDAC3O15379 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms