Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC20.79■□□□□ 0.92
NPHP1O15259 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP1O15259 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.79■□□□□ 0.92
NPHP1O15259 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC20.79■□□□□ 0.92
NPHP1O15259 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP1O15259 MIR4492-201ENST00000581627 80 ntBASIC20.79■□□□□ 0.92
NPHP1O15259 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.79■□□□□ 0.92
NPHP1O15259 RN7SL828P-201ENST00000607615 303 ntBASIC20.79■□□□□ 0.92
NPHP1O15259 AC008738.7-201ENST00000609744 511 ntBASIC20.79■□□□□ 0.92
NPHP1O15259 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
NPHP1O15259 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP1O15259 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP1O15259 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
NPHP1O15259 AC087499.5-201ENST00000452760 1342 ntBASIC20.78■□□□□ 0.92
NPHP1O15259 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP1O15259 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
NPHP1O15259 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
NPHP1O15259 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
NPHP1O15259 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP1O15259 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
NPHP1O15259 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
NPHP1O15259 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP1O15259 GPR53P-205ENST00000457298 1084 ntBASIC20.78■□□□□ 0.92
NPHP1O15259 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP1O15259 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP1O15259 MAX-210ENST00000555419 765 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP1O15259 AC140912.1-201ENST00000577171 1054 ntBASIC20.78■□□□□ 0.92
NPHP1O15259 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.78■□□□□ 0.92
NPHP1O15259 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP1O15259 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
NPHP1O15259 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
NPHP1O15259 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP1O15259 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP1O15259 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC20.77■□□□□ 0.92
NPHP1O15259 AC073439.1-201ENST00000624121 1774 ntBASIC20.77■□□□□ 0.92
NPHP1O15259 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.77■□□□□ 0.92
NPHP1O15259 AC138969.3-201ENST00000546612 1459 ntBASIC20.77■□□□□ 0.92
NPHP1O15259 AC138932.2-201ENST00000548268 1459 ntBASIC20.77■□□□□ 0.92
NPHP1O15259 AC126755.4-201ENST00000549796 1459 ntBASIC20.77■□□□□ 0.92
NPHP1O15259 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
NPHP1O15259 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 AC009477.1-201ENST00000452936 217 ntBASIC20.77■□□□□ 0.92
NPHP1O15259 AC135586.1-201ENST00000539323 574 ntBASIC20.77■□□□□ 0.92
NPHP1O15259 TP53TG3HP-202ENST00000569755 579 ntBASIC20.77■□□□□ 0.92
NPHP1O15259 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC20.77■□□□□ 0.92
NPHP1O15259 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC20.77■□□□□ 0.92
NPHP1O15259 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
NPHP1O15259 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
NPHP1O15259 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC20.77■□□□□ 0.92
NPHP1O15259 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP1O15259 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC20.77■□□□□ 0.92
NPHP1O15259 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP1O15259 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
NPHP1O15259 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC20.77■□□□□ 0.91
NPHP1O15259 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP1O15259 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
NPHP1O15259 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP1O15259 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC20.76■□□□□ 0.91
NPHP1O15259 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
NPHP1O15259 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC20.76■□□□□ 0.91
NPHP1O15259 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.76■□□□□ 0.91
NPHP1O15259 AC099398.1-201ENST00000567919 2776 ntBASIC20.76■□□□□ 0.91
NPHP1O15259 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
NPHP1O15259 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP1O15259 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP1O15259 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC20.76■□□□□ 0.91
NPHP1O15259 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP1O15259 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP1O15259 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP1O15259 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC20.76■□□□□ 0.91
NPHP1O15259 RPL37AP1-201ENST00000412502 279 ntBASIC20.76■□□□□ 0.91
NPHP1O15259 AL353779.1-201ENST00000434793 351 ntBASIC20.76■□□□□ 0.91
NPHP1O15259 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.76■□□□□ 0.91
NPHP1O15259 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms