Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 AL391256.1-201ENST00000443260 1855 ntBASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 RCN1P1-201ENST00000400413 996 ntBASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 SRP19-202ENST00000445150 833 ntTSL 2 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 AC104640.1-201ENST00000562617 2109 ntBASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 AC233702.3-201ENST00000578656 1387 ntBASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 AL021920.2-201ENST00000624828 1351 ntBASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.33□□□□□ -0.11
CHMP1AQ9HD42 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.33□□□□□ -0.11
CHMP1AQ9HD42 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CHMP1AQ9HD42 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.11
CHMP1AQ9HD42 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CHMP1AQ9HD42 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CHMP1AQ9HD42 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CHMP1AQ9HD42 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC14.33□□□□□ -0.11
CHMP1AQ9HD42 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 FUOM-202ENST00000368551 628 ntTSL 3 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 AL020989.1-201ENST00000422979 469 ntBASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 TSSC2-201ENST00000450217 709 ntBASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 AP005901.3-202ENST00000581653 237 ntBASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 DBET-201ENST00000630918 3363 ntBASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 HLA-A-202ENST00000376806 1854 ntBASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHMP1AQ9HD42 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms