Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 AC107890.1-201ENST00000422478 521 ntBASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 KRT18P34-201ENST00000488218 1270 ntBASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 AC105233.2-201ENST00000523697 349 ntBASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 AF228730.5-201ENST00000530288 346 ntBASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 AL138918.1-201ENST00000568306 659 ntBASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 AJ011932.1-201ENST00000621707 465 ntBASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAIPQ9BWF2 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 AGGF1P2-201ENST00000426656 2106 ntBASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 AC060834.1-201ENST00000443027 2032 ntBASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAIPQ9BWF2 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 AL158211.3-201ENST00000607385 239 ntBASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms